Analysis of interatomic Contacts of Structural Units in PDB entry:
3FME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FME entry

There is 1 chain in PDB entry 3FME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 46GLY 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3FME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
49 51Right-handed 310
Helix 2
2
A
89 105Right-handed alpha
Helix 3
3
A
136 146Right-handed alpha
Helix 4
4
A
151 173Right-handed alpha
Helix 5
5
A
181 184Right-handed 310
Helix 6
6
A
221 226Right-handed alpha
Helix 7
7
A
235 253Right-handed alpha
Helix 8
8
A
262 273Right-handed alpha
Helix 9
9
A
284 295Right-handed alpha
Helix 10
10
A
298 302Right-handed 310
Helix 11
11
A
304 309Right-handed alpha
Helix 12
12
A
311 320Right-handed alpha
Helix 13
13
A
323 333Right-handed alpha
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There are 2 sheets in PDB entry 3FME. Click on sheet of interest to get list of strands forming it: A, B,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 61first strand
Strand 2
A
65 72anti-parallel
Strand 3
A
77 84anti-parallel
Strand 4
A
125 130anti-parallel
Strand 5
A
115 120anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
186 187anti-parallel
Strand 3
A
193 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il