Analysis of interatomic Contacts of Structural Units in PDB entry:
3FMF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FMF entry

There are 8 chains in PDB entry 3FMF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -3SER 162
A
 ALA 164GLY 226
B
 GLN -2SER 162
B
 ALA 164VAL 225
C
 PHE -3SER 162
C
 ALA 164GLY 226
D
 THR 2SER 162
D
 ALA 164VAL 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 3FMF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 29Right-handed alpha
Helix 2
2
A
43 46Right-handed 310
Helix 3
3
A
48 58Right-handed alpha
Helix 4
4
A
73 82Right-handed alpha
Helix 5
5
A
87 97Right-handed alpha
Helix 6
6
A
124 132Right-handed alpha
Helix 7
7
A
144 159Right-handed alpha
Helix 8
8
A
176 190Right-handed alpha
Helix 9
9
A
199 203Right-handed 310
Helix 10
10
A
204 216Right-handed alpha
Helix 11
11
A
217 223Right-handed alpha
Helix 12
12
A
224 226Right-handed 310
Helix 13
13
B
14 29Right-handed alpha
Helix 14
14
B
48 58Right-handed alpha
Helix 15
15
B
73 82Right-handed alpha
Helix 16
16
B
87 99Right-handed alpha
Helix 17
17
B
124 132Right-handed alpha
Helix 18
18
B
144 159Right-handed alpha
Helix 19
19
B
176 190Right-handed alpha
Helix 20
20
B
199 203Right-handed 310
Helix 21
21
B
204 216Right-handed alpha
Helix 22
22
B
217 224Right-handed alpha
Helix 23
23
C
14 29Right-handed alpha
Helix 24
24
C
42 46Right-handed 310
Helix 25
25
C
48 58Right-handed alpha
Helix 26
26
C
73 82Right-handed alpha
Helix 27
27
C
87 97Right-handed alpha
Helix 28
28
C
123 131Right-handed alpha
Helix 29
29
C
144 159Right-handed alpha
Helix 30
30
C
176 190Right-handed alpha
Helix 31
31
C
199 203Right-handed 310
Helix 32
32
C
204 216Right-handed alpha
Helix 33
33
C
217 223Right-handed alpha
Helix 34
34
C
224 226Right-handed 310
Helix 35
35
D
14 29Right-handed alpha
Helix 36
36
D
48 58Right-handed alpha
Helix 37
37
D
73 82Right-handed alpha
Helix 38
38
D
87 99Right-handed alpha
Helix 39
39
D
123 131Right-handed alpha
Helix 40
40
D
144 159Right-handed alpha
Helix 41
41
D
176 190Right-handed alpha
Helix 42
42
D
199 203Right-handed 310
Helix 43
43
D
205 216Right-handed alpha
Helix 44
44
D
217 223Right-handed alpha
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There are 8 sheets in PDB entry 3FMF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 68first strand
Strand 2
A
33 41parallel
Strand 3
A
104 108parallel
Strand 4
A
2 8parallel
Strand 5
A
134 139parallel
Strand 6
A
163 171parallel
Strand 7
A
192 197parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 118first strand
Strand 2
A
122 123anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
32 36parallel
Strand 3
B
103 108parallel
Strand 4
B
3 8parallel
Strand 5
B
134 139parallel
Strand 6
B
163 171parallel
Strand 7
B
192 197parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
66 67parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
122 123anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 67first strand
Strand 2
C
33 40parallel
Strand 3
C
104 108parallel
Strand 4
C
2 8parallel
Strand 5
C
134 139parallel
Strand 6
C
163 171parallel
Strand 7
C
192 197parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
62 63first strand
Strand 2
D
32 36parallel
Strand 3
D
103 108parallel
Strand 4
D
3 8parallel
Strand 5
D
134 139parallel
Strand 6
D
163 171parallel
Strand 7
D
192 197parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 41first strand
Strand 2
D
66 68parallel
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