Analysis of interatomic Contacts of Structural Units in PDB entry:
3FMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3FMP entry

There are 4 chains in PDB entry 3FMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 9	PRO 428
B	LEU 70	LYS 298
C	ILE 9	PRO 428
D	LEU 70	LYS 298

There are 29 helices in PDB entry 3FMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	65	67	Right-handed 310
Helix 2	2	A	125	130	Right-handed alpha
Helix 3	3	A	147	150	Right-handed 310
Helix 4	4	A	190	193	Right-handed 310
Helix 5	5	A	345	348	Right-handed 310
Helix 6	6	B	94	98	Right-handed 310
Helix 7	7	B	100	110	Right-handed alpha
Helix 8	8	B	116	127	Right-handed alpha
Helix 9	9	B	143	154	Right-handed alpha
Helix 10	10	B	171	187	Right-handed alpha
Helix 11	11	B	217	226	Right-handed alpha
Helix 12	12	B	232	236	Right-handed 310
Helix 13	13	B	243	249	Right-handed alpha
Helix 14	14	B	252	262	Right-handed alpha
Helix 15	15	B	278	289	Right-handed alpha
Helix 16	16	C	65	67	Right-handed 310
Helix 17	17	C	125	130	Right-handed alpha
Helix 18	18	C	147	150	Right-handed 310
Helix 19	19	C	190	193	Right-handed 310
Helix 20	20	C	345	348	Right-handed 310
Helix 21	21	D	100	110	Right-handed alpha
Helix 22	22	D	116	127	Right-handed alpha
Helix 23	23	D	143	154	Right-handed alpha
Helix 24	24	D	171	187	Right-handed alpha
Helix 25	25	D	217	226	Right-handed alpha
Helix 26	26	D	232	236	Right-handed 310
Helix 27	27	D	243	249	Right-handed alpha
Helix 28	28	D	252	262	Right-handed alpha
Helix 29	29	D	278	289	Right-handed alpha

There are 18 sheets in PDB entry 3FMP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	338	343	parallel
Strand 3	A	327	331	anti-parallel
Strand 4	A	315	320	anti-parallel
Strand 5	A	305	310	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	21	first strand
Strand 2	A	401	405	anti-parallel
Strand 3	A	388	393	anti-parallel
Strand 4	A	362	368	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	397	398	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	50	53	anti-parallel
Strand 3	A	59	63	anti-parallel
Strand 4	A	87	89	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	113	first strand
Strand 2	A	117	122	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	157	first strand
Strand 2	A	164	169	anti-parallel
Strand 3	A	174	179	anti-parallel
Strand 4	A	183	189	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	200	first strand
Strand 2	A	207	211	anti-parallel
Strand 3	A	216	219	anti-parallel
Strand 4	A	225	229	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	250	first strand
Strand 2	A	253	260	anti-parallel
Strand 3	A	270	275	anti-parallel
Strand 4	A	286	291	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	292	297	anti-parallel
Strand 3	B	133	137	parallel
Strand 4	B	269	274	parallel
Strand 5	B	238	241	parallel
Strand 6	B	165	168	parallel
Strand 7	B	213	216	parallel
Strand 8	B	194	197	parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	14	first strand
Strand 2	C	338	343	parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel
Strand 5	C	305	310	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	21	first strand
Strand 2	C	401	405	anti-parallel
Strand 3	C	388	393	anti-parallel
Strand 4	C	362	368	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	24	26	parallel
Strand 3	C	397	398	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	50	53	anti-parallel
Strand 3	C	59	63	anti-parallel
Strand 4	C	87	89	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	113	first strand
Strand 2	C	117	122	anti-parallel
Strand 3	C	140	143	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	152	157	first strand
Strand 2	C	164	169	anti-parallel
Strand 3	C	174	179	anti-parallel
Strand 4	C	183	189	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	200	first strand
Strand 2	C	207	211	anti-parallel
Strand 3	C	216	219	anti-parallel
Strand 4	C	225	229	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	253	257	anti-parallel
Strand 3	C	270	275	anti-parallel
Strand 4	C	286	291	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	292	297	anti-parallel
Strand 3	D	133	137	parallel
Strand 4	D	269	274	parallel
Strand 5	D	238	241	parallel
Strand 6	D	165	168	parallel
Strand 7	D	213	216	parallel
Strand 8	D	194	197	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3FMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
3FMP