Analysis of interatomic Contacts of Structural Units in PDB entry:
3FMV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3FMV entry

There are 8 chains in PDB entry 3FMV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 6	TYR 195
B	LYS 6	TYR 195
C	LYS 6	TYR 195
D	LYS 6	TYR 195
E	LYS 6	TYR 195
F	LYS 6	TYR 195
G	LYS 6	TYR 195
H	LYS 6	TYR 195

There are 56 helices in PDB entry 3FMV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	18	30	Right-handed alpha
Helix 2	2	A	61	71	Right-handed alpha
Helix 3	3	A	73	81	Right-handed alpha
Helix 4	4	A	81	91	Right-handed alpha
Helix 5	5	A	113	125	Right-handed alpha
Helix 6	6	A	145	165	Right-handed alpha
Helix 7	7	A	168	185	Right-handed alpha
Helix 8	8	B	18	30	Right-handed alpha
Helix 9	9	B	61	71	Right-handed alpha
Helix 10	10	B	73	80	Right-handed alpha
Helix 11	11	B	81	91	Right-handed alpha
Helix 12	12	B	113	125	Right-handed alpha
Helix 13	13	B	145	165	Right-handed alpha
Helix 14	14	B	168	184	Right-handed alpha
Helix 15	15	C	18	30	Right-handed alpha
Helix 16	16	C	61	71	Right-handed alpha
Helix 17	17	C	75	80	Right-handed alpha
Helix 18	18	C	81	90	Right-handed alpha
Helix 19	19	C	113	125	Right-handed alpha
Helix 20	20	C	147	165	Right-handed alpha
Helix 21	21	C	168	184	Right-handed alpha
Helix 22	22	D	18	30	Right-handed alpha
Helix 23	23	D	61	71	Right-handed alpha
Helix 24	24	D	73	80	Right-handed alpha
Helix 25	25	D	81	91	Right-handed alpha
Helix 26	26	D	113	127	Right-handed alpha
Helix 27	27	D	147	165	Right-handed alpha
Helix 28	28	D	168	184	Right-handed alpha
Helix 29	29	E	18	30	Right-handed alpha
Helix 30	30	E	61	71	Right-handed alpha
Helix 31	31	E	73	80	Right-handed alpha
Helix 32	32	E	81	93	Right-handed alpha
Helix 33	33	E	113	125	Right-handed alpha
Helix 34	34	E	147	165	Right-handed alpha
Helix 35	35	E	168	183	Right-handed alpha
Helix 36	36	F	18	30	Right-handed alpha
Helix 37	37	F	61	72	Right-handed alpha
Helix 38	38	F	73	80	Right-handed alpha
Helix 39	39	F	81	93	Right-handed alpha
Helix 40	40	F	113	125	Right-handed alpha
Helix 41	41	F	147	165	Right-handed alpha
Helix 42	42	F	168	181	Right-handed alpha
Helix 43	43	G	18	30	Right-handed alpha
Helix 44	44	G	61	71	Right-handed alpha
Helix 45	45	G	73	80	Right-handed alpha
Helix 46	46	G	81	93	Right-handed alpha
Helix 47	47	G	113	125	Right-handed alpha
Helix 48	48	G	147	165	Right-handed alpha
Helix 49	49	G	168	185	Right-handed alpha
Helix 50	50	H	18	30	Right-handed alpha
Helix 51	51	H	61	71	Right-handed alpha
Helix 52	52	H	73	80	Right-handed alpha
Helix 53	53	H	81	91	Right-handed alpha
Helix 54	54	H	113	123	Right-handed alpha
Helix 55	55	H	145	165	Right-handed alpha
Helix 56	56	H	168	185	Right-handed alpha

There are 16 sheets in PDB entry 3FMV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	9	13	parallel
Strand 3	A	108	111	parallel
Strand 4	A	134	139	parallel
Strand 5	A	190	194	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	54	56	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	38	first strand
Strand 2	B	8	13	parallel
Strand 3	B	108	111	parallel
Strand 4	B	134	139	parallel
Strand 5	B	189	194	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	47	first strand
Strand 2	B	53	56	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	9	13	parallel
Strand 3	C	108	111	parallel
Strand 4	C	134	139	parallel
Strand 5	C	192	194	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	54	56	anti-parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	38	first strand
Strand 2	D	9	13	parallel
Strand 3	D	108	111	parallel
Strand 4	D	134	139	parallel
Strand 5	D	192	194	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	54	56	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	38	first strand
Strand 2	E	8	13	parallel
Strand 3	E	108	111	parallel
Strand 4	E	136	140	parallel
Strand 5	E	188	189	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	45	first strand
Strand 2	E	54	56	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	34	38	first strand
Strand 2	F	9	13	parallel
Strand 3	F	108	111	parallel
Strand 4	F	134	139	parallel
Strand 5	F	193	194	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	45	first strand
Strand 2	F	54	56	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	33	38	first strand
Strand 2	G	8	13	parallel
Strand 3	G	108	111	parallel
Strand 4	G	134	139	parallel
Strand 5	G	193	194	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	45	first strand
Strand 2	G	54	56	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	34	38	first strand
Strand 2	H	9	13	parallel
Strand 3	H	108	111	parallel
Strand 4	H	134	139	parallel
Strand 5	H	189	194	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	49	first strand
Strand 2	H	52	56	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3FMV

Analysis of interatomic Contacts of Structural Units in PDB entry:
3FMV