Analysis of interatomic Contacts of Structural Units in PDB entry:
3FMW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FMW entry

There are 3 chains in PDB entry 3FMW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 14ASN 510
B
 THR 12ALA 509
C
 THR 12VAL 484
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 3FMW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 34Right-handed alpha
Helix 2
2
A
57 66Right-handed alpha
Helix 3
3
A
69 74Right-handed alpha
Helix 4
4
A
94 98Right-handed 310
Helix 5
5
A
109 125Right-handed alpha
Helix 6
6
A
170 176Right-handed alpha
Helix 7
7
A
244 252Right-handed alpha
Helix 8
8
A
291 293Right-handed 310
Helix 9
9
A
303 325Right-handed alpha
Helix 10
10
A
328 357Right-handed alpha
Helix 11
11
A
363 375Right-handed alpha
Helix 12
12
A
377 390Right-handed alpha
Helix 13
13
A
429 433Right-handed alpha
Helix 14
14
A
446 452Right-handed alpha
Helix 15
15
A
493 506Right-handed alpha
Helix 16
16
B
21 34Right-handed alpha
Helix 17
17
B
57 66Right-handed alpha
Helix 18
18
B
69 74Right-handed alpha
Helix 19
19
B
94 98Right-handed 310
Helix 20
20
B
109 125Right-handed alpha
Helix 21
21
B
170 176Right-handed alpha
Helix 22
22
B
244 252Right-handed alpha
Helix 23
23
B
291 293Right-handed 310
Helix 24
24
B
303 325Right-handed alpha
Helix 25
25
B
328 357Right-handed alpha
Helix 26
26
B
363 375Right-handed alpha
Helix 27
27
B
377 390Right-handed alpha
Helix 28
28
B
429 433Right-handed alpha
Helix 29
29
B
446 452Right-handed alpha
Helix 30
30
B
493 506Right-handed alpha
Helix 31
31
C
21 34Right-handed alpha
Helix 32
32
C
57 66Right-handed alpha
Helix 33
33
C
69 74Right-handed alpha
Helix 34
34
C
94 98Right-handed 310
Helix 35
35
C
109 125Right-handed alpha
Helix 36
36
C
170 176Right-handed alpha
Helix 37
37
C
244 252Right-handed alpha
Helix 38
38
C
291 293Right-handed 310
Helix 39
39
C
303 325Right-handed alpha
Helix 40
40
C
328 357Right-handed alpha
Helix 41
41
C
363 375Right-handed alpha
Helix 42
42
C
377 390Right-handed alpha
Helix 43
43
C
429 433Right-handed alpha
Helix 44
44
C
446 452Right-handed alpha
Helix 45
45
C
493 506Right-handed alpha
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There are 18 sheets in PDB entry 3FMW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
38 41parallel
Strand 3
A
15 18parallel
Strand 4
A
161 164parallel
Strand 5
A
287 289parallel
Strand 6
A
283 284anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 136first strand
Strand 2
A
144 150anti-parallel
Strand 3
A
153 159anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 215first strand
Strand 2
A
227 232anti-parallel
Strand 3
A
187 193anti-parallel
Strand 4
A
267 272anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
295 296anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
427 428anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
460 462first strand
Strand 2
A
439 441parallel
Strand 3
A
475 478anti-parallel
Strand 4
A
484 488anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 127first strand
Strand 2
B
38 41parallel
Strand 3
B
15 18parallel
Strand 4
B
161 164parallel
Strand 5
B
287 289parallel
Strand 6
B
283 284anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 136first strand
Strand 2
B
144 150anti-parallel
Strand 3
B
153 159anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 216first strand
Strand 2
B
227 232anti-parallel
Strand 3
B
187 193anti-parallel
Strand 4
B
267 272anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
277 278first strand
Strand 2
B
295 296anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 419first strand
Strand 2
B
427 428anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
460 462first strand
Strand 2
B
439 441parallel
Strand 3
B
475 478anti-parallel
Strand 4
B
484 488anti-parallel
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There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 127first strand
Strand 2
C
38 41parallel
Strand 3
C
15 18parallel
Strand 4
C
161 164parallel
Strand 5
C
287 289parallel
Strand 6
C
283 284anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 136first strand
Strand 2
C
144 150anti-parallel
Strand 3
C
153 159anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
213 215first strand
Strand 2
C
227 232anti-parallel
Strand 3
C
187 192anti-parallel
Strand 4
C
270 272anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
277 278first strand
Strand 2
C
295 296anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
418 419first strand
Strand 2
C
427 428anti-parallel
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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
460 462first strand
Strand 2
C
439 441parallel
Strand 3
C
475 478anti-parallel
Strand 4
C
484 488anti-parallel
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