Analysis of interatomic Contacts of Structural Units in PDB entry:
3FMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FMX entry

There is 1 chain in PDB entry 3FMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 SER 5LEU 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3FMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
15 21Right-handed alpha
Helix 2
2
X
21 36Right-handed alpha
Helix 3
3
X
48 56Right-handed alpha
Helix 4
4
X
62 68Right-handed alpha
Helix 5
5
X
85 92Right-handed alpha
Helix 6
6
X
93 101Right-handed alpha
Helix 7
7
X
164 174Right-handed alpha
Helix 8
8
X
198 212Right-handed alpha
Helix 9
9
X
224 234Right-handed alpha
Helix 10
10
X
246 251Right-handed alpha
Helix 11
11
X
262 265Right-handed 310
Helix 12
12
X
288 292Right-handed 310
Helix 13
13
X
299 315Right-handed alpha
Helix 14
14
X
317 338Right-handed alpha
Helix 15
15
X
349 364Right-handed alpha
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There are 3 sheets in PDB entry 3FMX. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
39 40first strand
Strand 2
X
6 13parallel
Strand 3
X
72 77parallel
Strand 4
X
279 283parallel
Strand 5
X
267 271anti-parallel
Strand 6
X
105 107anti-parallel
Strand 7
X
129 135anti-parallel
Strand 8
X
110 111anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
39 40first strand
Strand 2
X
6 13parallel
Strand 3
X
72 77parallel
Strand 4
X
279 283parallel
Strand 5
X
267 271anti-parallel
Strand 6
X
105 107anti-parallel
Strand 7
X
129 135anti-parallel
Strand 8
X
240 244parallel
Strand 9
X
186 191parallel
Strand 10
X
218 223parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
145 148first strand
Strand 2
X
156 159anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il