Analysis of interatomic Contacts of Structural Units in PDB entry:
3FN5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FN5 entry

There are 2 chains in PDB entry 3FN5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 89THR 249
B
 MET 87THR 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 3FN5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
101 104Right-handed 310
Helix 2
2
A
114 121Right-handed alpha
Helix 3
3
A
149 153Right-handed 310
Helix 4
4
A
155 161Right-handed 310
Helix 5
5
A
190 195Right-handed 310
Helix 6
6
A
230 232Right-handed 310
Helix 7
7
A
233 241Right-handed alpha
Helix 8
8
B
101 104Right-handed 310
Helix 9
9
B
114 121Right-handed alpha
Helix 10
10
B
149 153Right-handed 310
Helix 11
11
B
155 161Right-handed 310
Helix 12
12
B
190 195Right-handed 310
Helix 13
13
B
230 232Right-handed 310
Helix 14
14
B
233 242Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3FN5. Click on sheet of interest to get list of strands forming it: A, B,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
122 124parallel
Strand 4
A
136 140anti-parallel
Strand 5
A
202 208parallel
Strand 6
A
216 228anti-parallel
Strand 7
A
174 186anti-parallel
Strand 8
A
166 170anti-parallel
Strand 9
A
96 100anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 100first strand
Strand 2
B
105 110anti-parallel
Strand 3
B
122 124parallel
Strand 4
B
136 140anti-parallel
Strand 5
B
202 208parallel
Strand 6
B
216 228anti-parallel
Strand 7
B
174 186anti-parallel
Strand 8
B
166 170anti-parallel
Strand 9
B
96 100anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il