Analysis of interatomic Contacts of Structural Units in PDB entry:
3FND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FND entry

There is 1 chain in PDB entry 3FND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 45HIS 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3FND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
59 64Right-handed alpha
Helix 2
2
A
65 67Right-handed 310
Helix 3
3
A
68 72Right-handed 310
Helix 4
4
A
96 107Right-handed alpha
Helix 5
5
A
121 129Right-handed alpha
Helix 6
6
A
129 147Right-handed alpha
Helix 7
7
A
161 180Right-handed alpha
Helix 8
8
A
201 205Right-handed 310
Helix 9
9
A
227 241Right-handed alpha
Helix 10
10
A
245 247Right-handed 310
Helix 11
11
A
261 265Right-handed 310
Helix 12
12
A
276 284Right-handed alpha
Helix 13
13
A
285 290Right-handed 310
Helix 14
14
A
300 314Right-handed alpha
Helix 15
15
A
323 327Right-handed 310
Helix 16
16
A
329 335Right-handed 310
Helix 17
17
A
336 346Right-handed alpha
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There are 2 sheets in PDB entry 3FND. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
74 82anti-parallel
Strand 3
A
110 117parallel
Strand 4
A
151 154parallel
Strand 5
A
185 190parallel
Strand 6
A
207 210parallel
Strand 7
A
249 254parallel
Strand 8
A
318 322parallel
Strand 9
A
48 54parallel
Strand 10
A
74 82parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
256 259anti-parallel
Strand 3
A
296 297anti-parallel
Strand 4
A
292 293anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il