Analysis of interatomic Contacts of Structural Units in PDB entry:
3FO8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FO8 entry

There is 1 chain in PDB entry 3FO8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ASP 87ASP 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3FO8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
D
147 158Right-handed alpha
Helix 2
2
D
200 206Right-handed alpha
Helix 3
3
D
207 218Right-handed alpha
Helix 4
4
D
228 232Right-handed 310
Helix 5
5
D
241 245Right-handed alpha
Helix 6
6
D
246 249Right-handed 310
Helix 7
7
D
264 269Right-handed alpha
Helix 8
8
D
310 317Right-handed alpha
Helix 9
9
D
346 350Right-handed 310
Helix 10
10
D
351 359Right-handed alpha
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There are 4 sheets in PDB entry 3FO8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
99 105first strand
Strand 2
D
181 187anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
140 144first strand
Strand 2
D
123 134anti-parallel
Strand 3
D
115 120anti-parallel
Strand 4
D
167 171anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
222 224first strand
Strand 2
D
323 325anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
260 262first strand
Strand 2
D
251 255anti-parallel
Strand 3
D
336 339parallel
Strand 4
D
234 240anti-parallel
Strand 5
D
278 285anti-parallel
Strand 6
D
288 296anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il