Analysis of interatomic Contacts of Structural Units in PDB entry:
3FOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FOF entry

There are 8 chains in PDB entry 3FOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 5LEU 479
B
 GLN 5LEU 479
C
 THR 417ASN 636
D
 THR 417ASN 636
E
 A 1 T 15
F
 A 1 T 19
G
 C 1 T 15
H
 G 1 G 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 3FOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 26Right-handed alpha
Helix 2
2
A
41 51Right-handed alpha
Helix 3
3
A
62 71Right-handed alpha
Helix 4
4
A
77 90Right-handed alpha
Helix 5
5
A
124 131Right-handed alpha
Helix 6
6
A
160 165Right-handed alpha
Helix 7
7
A
182 196Right-handed alpha
Helix 8
8
A
200 205Right-handed alpha
Helix 9
9
A
221 232Right-handed alpha
Helix 10
10
A
264 278Right-handed alpha
Helix 11
11
A
308 319Right-handed alpha
Helix 12
12
A
341 384Right-handed alpha
Helix 13
13
A
384 392Right-handed alpha
Helix 14
14
A
398 404Right-handed alpha
Helix 15
15
A
412 422Right-handed alpha
Helix 16
16
A
430 453Right-handed alpha
Helix 17
17
A
455 473Right-handed alpha
Helix 18
18
B
11 26Right-handed alpha
Helix 19
19
B
41 51Right-handed alpha
Helix 20
20
B
62 71Right-handed alpha
Helix 21
21
B
77 90Right-handed alpha
Helix 22
22
B
124 131Right-handed alpha
Helix 23
23
B
160 165Right-handed alpha
Helix 24
24
B
182 196Right-handed alpha
Helix 25
25
B
200 205Right-handed alpha
Helix 26
26
B
221 232Right-handed alpha
Helix 27
27
B
264 278Right-handed alpha
Helix 28
28
B
308 319Right-handed alpha
Helix 29
29
B
341 384Right-handed alpha
Helix 30
30
B
384 392Right-handed alpha
Helix 31
31
B
398 404Right-handed alpha
Helix 32
32
B
412 422Right-handed alpha
Helix 33
33
B
425 429Right-handed 310
Helix 34
34
B
430 453Right-handed alpha
Helix 35
35
B
455 473Right-handed alpha
Helix 36
36
C
433 443Right-handed alpha
Helix 37
37
C
466 472Right-handed alpha
Helix 38
38
C
473 482Right-handed alpha
Helix 39
39
C
508 524Right-handed alpha
Helix 40
40
C
526 533Right-handed alpha
Helix 41
41
C
563 567Right-handed 310
Helix 42
42
C
589 594Right-handed 310
Helix 43
43
C
613 618Right-handed alpha
Helix 44
44
C
626 633Right-handed alpha
Helix 45
45
D
434 444Right-handed alpha
Helix 46
46
D
466 472Right-handed alpha
Helix 47
47
D
473 482Right-handed alpha
Helix 48
48
D
508 524Right-handed alpha
Helix 49
49
D
526 533Right-handed alpha
Helix 50
50
D
563 567Right-handed 310
Helix 51
51
D
589 594Right-handed 310
Helix 52
52
D
613 620Right-handed alpha
Helix 53
53
D
626 633Right-handed alpha
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There are 12 sheets in PDB entry 3FOF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
120 122anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 143first strand
Strand 2
A
150 152anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 246first strand
Strand 2
A
252 253anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 332first strand
Strand 2
A
337 339anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
120 122anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 143first strand
Strand 2
B
150 152anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
245 246first strand
Strand 2
B
252 253anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 332first strand
Strand 2
B
337 339anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
501 503first strand
Strand 2
C
535 537parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
545 546first strand
Strand 2
C
576 577anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
431 433first strand
Strand 2
D
453 455parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
501 503first strand
Strand 2
D
535 537parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il