Analysis of interatomic Contacts of Structural Units in PDB entry:
3FOT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FOT entry

There is 1 chain in PDB entry 3FOT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9LEU 519
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3FOT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 18Right-handed 310
Helix 2
2
A
35 42Right-handed alpha
Helix 3
3
A
42 47Right-handed alpha
Helix 4
4
A
70 89Right-handed alpha
Helix 5
5
A
90 94Right-handed 310
Helix 6
6
A
113 124Right-handed alpha
Helix 7
7
A
133 148Right-handed alpha
Helix 8
8
A
185 189Right-handed 310
Helix 9
9
A
190 206Right-handed alpha
Helix 10
10
A
213 217Right-handed 310
Helix 11
11
A
225 229Right-handed 310
Helix 12
12
A
233 237Right-handed 310
Helix 13
13
A
240 244Right-handed 310
Helix 14
14
A
245 265Right-handed alpha
Helix 15
15
A
285 300Right-handed alpha
Helix 16
16
A
305 322Right-handed alpha
Helix 17
17
A
342 345Right-handed 310
Helix 18
18
A
346 351Right-handed alpha
Helix 19
19
A
367 372Right-handed 310
Helix 20
20
A
378 402Right-handed alpha
Helix 21
21
A
405 424Right-handed alpha
Helix 22
22
A
443 445Right-handed 310
Helix 23
23
A
499 517Right-handed alpha
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There are 4 sheets in PDB entry 3FOT. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
28 32anti-parallel
Strand 3
A
105 109anti-parallel
Strand 4
A
95 97anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 129first strand
Strand 2
A
158 163parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
53 61anti-parallel
Strand 5
A
458 469anti-parallel
Strand 6
A
449 451anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 283first strand
Strand 2
A
486 494anti-parallel
Strand 3
A
477 483anti-parallel
Strand 4
A
435 441parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 340first strand
Strand 2
A
358 365anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il