Analysis of interatomic Contacts of Structural Units in PDB entry:
3FP9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3FP9 entry

There are 12 chains in PDB entry 3FP9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 98	VAL 247
B	PRO 98	VAL 247
C	PRO 98	VAL 247
D	PRO 98	VAL 247
E	PRO 98	VAL 247
F	PRO 98	VAL 247
G	PRO 98	VAL 247
H	PRO 98	VAL 247
I	PRO 98	VAL 247
J	PRO 98	VAL 247
K	PRO 98	VAL 247
L	PRO 98	VAL 247

There are 35 helices in PDB entry 3FP9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	190	194	Right-handed 310
Helix 2	2	A	202	206	Right-handed 310
Helix 3	3	A	237	247	Right-handed alpha
Helix 4	4	B	131	135	Right-handed 310
Helix 5	5	B	190	194	Right-handed 310
Helix 6	6	B	237	247	Right-handed alpha
Helix 7	7	C	131	135	Right-handed 310
Helix 8	8	C	190	194	Right-handed 310
Helix 9	9	C	237	247	Right-handed alpha
Helix 10	10	D	131	135	Right-handed 310
Helix 11	11	D	189	194	Right-handed alpha
Helix 12	12	D	237	247	Right-handed alpha
Helix 13	13	E	131	135	Right-handed 310
Helix 14	14	E	190	193	Right-handed 310
Helix 15	15	E	237	247	Right-handed alpha
Helix 16	16	F	131	135	Right-handed 310
Helix 17	17	F	190	194	Right-handed 310
Helix 18	18	F	237	247	Right-handed alpha
Helix 19	19	G	131	135	Right-handed 310
Helix 20	20	G	190	194	Right-handed 310
Helix 21	21	G	237	247	Right-handed alpha
Helix 22	22	H	190	193	Right-handed 310
Helix 23	23	H	237	247	Right-handed alpha
Helix 24	24	I	131	135	Right-handed 310
Helix 25	25	I	190	193	Right-handed 310
Helix 26	26	I	237	247	Right-handed alpha
Helix 27	27	J	131	135	Right-handed 310
Helix 28	28	J	190	194	Right-handed 310
Helix 29	29	J	237	247	Right-handed alpha
Helix 30	30	K	131	135	Right-handed 310
Helix 31	31	K	190	193	Right-handed 310
Helix 32	32	K	237	247	Right-handed alpha
Helix 33	33	L	131	135	Right-handed 310
Helix 34	34	L	189	194	Right-handed alpha
Helix 35	35	L	237	247	Right-handed alpha

There are 24 sheets in PDB entry 3FP9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	125	first strand
Strand 2	A	112	117	anti-parallel
Strand 3	A	99	107	anti-parallel
Strand 4	A	140	143	anti-parallel
Strand 5	A	149	152	anti-parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	107	first strand
Strand 2	F	120	125	anti-parallel
Strand 3	F	112	117	anti-parallel
Strand 4	F	99	107	anti-parallel
Strand 5	E	120	124	anti-parallel
Strand 6	E	113	117	anti-parallel
Strand 7	E	99	107	anti-parallel
Strand 8	E	140	143	anti-parallel
Strand 9	E	149	152	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	107	first strand
Strand 2	F	120	125	anti-parallel
Strand 3	F	112	117	anti-parallel
Strand 4	F	99	107	anti-parallel
Strand 5	F	140	143	anti-parallel
Strand 6	F	149	152	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	152	first strand
Strand 2	D	140	143	anti-parallel
Strand 3	D	100	107	anti-parallel
Strand 4	D	112	117	anti-parallel
Strand 5	D	120	125	anti-parallel
Strand 6	E	99	107	anti-parallel

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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	183	188	first strand
Strand 2	A	159	167	anti-parallel
Strand 3	A	219	223	anti-parallel
Strand 4	A	228	233	anti-parallel
Strand 5	A	183	188	parallel
Strand 6	A	173	177	anti-parallel
Strand 7	A	159	167	anti-parallel

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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	188	first strand
Strand 2	B	159	167	anti-parallel
Strand 3	B	173	177	anti-parallel
Strand 4	B	183	188	anti-parallel
Strand 5	B	228	233	parallel
Strand 6	B	219	223	anti-parallel
Strand 7	B	159	167	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	188	first strand
Strand 2	C	159	167	anti-parallel
Strand 3	C	219	223	anti-parallel
Strand 4	C	228	233	anti-parallel
Strand 5	C	183	188	parallel
Strand 6	C	173	177	anti-parallel
Strand 7	C	159	167	anti-parallel

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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	188	first strand
Strand 2	D	159	167	anti-parallel
Strand 3	D	173	177	anti-parallel
Strand 4	D	183	188	anti-parallel
Strand 5	D	228	232	parallel
Strand 6	D	219	223	anti-parallel
Strand 7	D	159	167	anti-parallel

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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	188	first strand
Strand 2	E	159	167	anti-parallel
Strand 3	E	173	177	anti-parallel
Strand 4	E	183	188	anti-parallel
Strand 5	E	228	232	parallel
Strand 6	E	219	223	anti-parallel
Strand 7	E	159	167	anti-parallel

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There are 7 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	188	first strand
Strand 2	F	159	167	anti-parallel
Strand 3	F	219	223	anti-parallel
Strand 4	F	228	233	anti-parallel
Strand 5	F	183	188	parallel
Strand 6	F	173	177	anti-parallel
Strand 7	F	159	167	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	140	143	anti-parallel
Strand 3	B	100	107	anti-parallel
Strand 4	B	112	117	anti-parallel
Strand 5	B	120	125	anti-parallel
Strand 6	C	99	107	anti-parallel
Strand 7	C	112	117	anti-parallel
Strand 8	C	120	125	anti-parallel

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There are 8 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	152	first strand
Strand 2	B	140	143	anti-parallel
Strand 3	B	100	107	anti-parallel
Strand 4	B	112	117	anti-parallel
Strand 5	B	120	125	anti-parallel
Strand 6	C	99	107	anti-parallel
Strand 7	C	140	143	anti-parallel
Strand 8	C	149	152	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	125	first strand
Strand 2	G	112	117	anti-parallel
Strand 3	G	99	107	anti-parallel
Strand 4	G	140	143	anti-parallel
Strand 5	G	149	152	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	120	125	first strand
Strand 2	G	112	117	anti-parallel
Strand 3	G	99	107	anti-parallel
Strand 4	L	120	125	anti-parallel
Strand 5	L	112	117	anti-parallel
Strand 6	L	100	107	anti-parallel
Strand 7	L	140	143	anti-parallel
Strand 8	L	149	152	anti-parallel

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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	183	188	first strand
Strand 2	G	159	167	anti-parallel
Strand 3	G	219	223	anti-parallel
Strand 4	G	228	233	anti-parallel
Strand 5	G	183	188	parallel
Strand 6	G	173	177	anti-parallel
Strand 7	G	159	167	anti-parallel

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There are 7 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	183	188	first strand
Strand 2	H	159	167	anti-parallel
Strand 3	H	173	177	anti-parallel
Strand 4	H	183	188	anti-parallel
Strand 5	H	228	232	parallel
Strand 6	H	219	223	anti-parallel
Strand 7	H	159	167	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	183	188	first strand
Strand 2	I	159	167	anti-parallel
Strand 3	I	219	223	anti-parallel
Strand 4	I	228	233	anti-parallel
Strand 5	I	183	188	parallel
Strand 6	I	173	177	anti-parallel
Strand 7	I	159	167	anti-parallel

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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	183	188	first strand
Strand 2	J	159	167	anti-parallel
Strand 3	J	173	177	anti-parallel
Strand 4	J	183	188	anti-parallel
Strand 5	J	228	233	parallel
Strand 6	J	219	223	anti-parallel
Strand 7	J	159	167	anti-parallel

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There are 7 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	183	188	first strand
Strand 2	K	159	167	anti-parallel
Strand 3	K	173	177	anti-parallel
Strand 4	K	183	188	anti-parallel
Strand 5	K	228	232	parallel
Strand 6	K	219	223	anti-parallel
Strand 7	K	159	167	anti-parallel

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There are 7 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	183	188	first strand
Strand 2	L	159	167	anti-parallel
Strand 3	L	219	223	anti-parallel
Strand 4	L	228	233	anti-parallel
Strand 5	L	183	188	parallel
Strand 6	L	173	177	anti-parallel
Strand 7	L	159	167	anti-parallel

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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	152	first strand
Strand 2	H	140	143	anti-parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	112	117	anti-parallel
Strand 5	H	120	125	anti-parallel
Strand 6	I	99	107	anti-parallel
Strand 7	I	113	117	anti-parallel
Strand 8	I	120	124	anti-parallel

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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	152	first strand
Strand 2	H	140	143	anti-parallel
Strand 3	H	100	107	anti-parallel
Strand 4	H	112	117	anti-parallel
Strand 5	H	120	125	anti-parallel
Strand 6	I	99	107	anti-parallel
Strand 7	I	140	143	anti-parallel
Strand 8	I	149	152	anti-parallel

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There are 8 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	152	first strand
Strand 2	J	140	143	anti-parallel
Strand 3	J	100	107	anti-parallel
Strand 4	J	112	117	anti-parallel
Strand 5	J	120	125	anti-parallel
Strand 6	K	99	107	anti-parallel
Strand 7	K	112	117	anti-parallel
Strand 8	K	120	125	anti-parallel

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There are 8 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	152	first strand
Strand 2	J	140	143	anti-parallel
Strand 3	J	100	107	anti-parallel
Strand 4	J	112	117	anti-parallel
Strand 5	J	120	125	anti-parallel
Strand 6	K	99	107	anti-parallel
Strand 7	K	140	143	anti-parallel
Strand 8	K	149	152	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3FP9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3FP9