Analysis of interatomic Contacts of Structural Units in PDB entry:
3FPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FPF entry

There are 2 chains in PDB entry 3FPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PRO 265
B
 SER 2PRO 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 3FPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 18Right-handed alpha
Helix 2
2
A
19 21Right-handed 310
Helix 3
3
A
23 27Right-handed 310
Helix 4
4
A
32 44Right-handed alpha
Helix 5
5
A
49 59Right-handed alpha
Helix 6
6
A
62 91Right-handed alpha
Helix 7
7
A
93 100Right-handed alpha
Helix 8
8
A
103 118Right-handed alpha
Helix 9
9
A
135 144Right-handed alpha
Helix 10
10
A
155 170Right-handed alpha
Helix 11
11
A
180 187Right-handed 310
Helix 12
12
A
200 212Right-handed alpha
Helix 13
13
A
224 230Right-handed 310
Helix 14
14
A
236 240Right-handed 310
Helix 15
15
B
4 24Right-handed alpha
Helix 16
16
B
28 44Right-handed alpha
Helix 17
17
B
49 58Right-handed alpha
Helix 18
18
B
59 61Right-handed 310
Helix 19
19
B
62 91Right-handed alpha
Helix 20
20
B
93 100Right-handed alpha
Helix 21
21
B
103 118Right-handed alpha
Helix 22
22
B
135 144Right-handed alpha
Helix 23
23
B
155 169Right-handed alpha
Helix 24
24
B
180 187Right-handed 310
Helix 25
25
B
200 212Right-handed alpha
Helix 26
26
B
224 230Right-handed 310
Helix 27
27
B
236 240Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 3FPF. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
148 153parallel
Strand 3
A
125 129parallel
Strand 4
A
191 194parallel
Strand 5
A
217 222parallel
Strand 6
A
257 263anti-parallel
Strand 7
A
242 248anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 178first strand
Strand 2
B
148 153parallel
Strand 3
B
125 129parallel
Strand 4
B
191 194parallel
Strand 5
B
217 222parallel
Strand 6
B
257 263anti-parallel
Strand 7
B
242 248anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il