Analysis of interatomic Contacts of Structural Units in PDB entry:
3FPK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FPK entry

There are 2 chains in PDB entry 3FPK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2TRP 248
B
 ALA 2TRP 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3FPK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
75 81Right-handed alpha
Helix 2
2
A
99 103Right-handed 310
Helix 3
3
A
118 128Right-handed alpha
Helix 4
4
A
145 149Right-handed 310
Helix 5
5
A
151 163Right-handed alpha
Helix 6
6
A
184 191Right-handed alpha
Helix 7
7
A
192 199Right-handed alpha
Helix 8
8
A
214 230Right-handed alpha
Helix 9
9
B
75 81Right-handed alpha
Helix 10
10
B
99 103Right-handed 310
Helix 11
11
B
118 128Right-handed alpha
Helix 12
12
B
145 149Right-handed 310
Helix 13
13
B
151 162Right-handed alpha
Helix 14
14
B
184 191Right-handed alpha
Helix 15
15
B
192 199Right-handed alpha
Helix 16
16
B
214 230Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3FPK. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 53first strand
Strand 2
A
36 43anti-parallel
Strand 3
A
87 91anti-parallel
Strand 4
A
4 14anti-parallel
Strand 5
A
19 25anti-parallel
Strand 6
A
63 68anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
166 172parallel
Strand 3
A
136 143parallel
Strand 4
A
108 114parallel
Strand 5
A
207 213parallel
Strand 6
A
242 246parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 53first strand
Strand 2
B
36 43anti-parallel
Strand 3
B
87 91anti-parallel
Strand 4
B
4 14anti-parallel
Strand 5
B
19 25anti-parallel
Strand 6
B
63 68anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 182first strand
Strand 2
B
166 172parallel
Strand 3
B
136 143parallel
Strand 4
B
108 114parallel
Strand 5
B
207 213parallel
Strand 6
B
242 246parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il