Analysis of interatomic Contacts of Structural Units in PDB entry:
3FPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FPP entry

There are 2 chains in PDB entry 3FPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 43THR 308
B
 ARG 42THR 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3FPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
94 126Right-handed alpha
Helix 2
2
A
126 138Right-handed alpha
Helix 3
3
A
143 156Right-handed alpha
Helix 4
4
A
156 170Right-handed alpha
Helix 5
5
A
170 175Right-handed alpha
Helix 6
6
A
230 234Right-handed 310
Helix 7
7
B
94 138Right-handed alpha
Helix 8
8
B
143 151Right-handed alpha
Helix 9
9
B
151 183Right-handed alpha
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There are 8 sheets in PDB entry 3FPP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
293 299anti-parallel
Strand 3
A
49 58anti-parallel
Strand 4
A
222 228anti-parallel
Strand 5
A
276 282anti-parallel
Strand 6
A
259 262anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
215 218anti-parallel
Strand 3
A
192 197anti-parallel
Strand 4
A
82 83anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 187first strand
Strand 2
A
88 92anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
204 205anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
303 307anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 257first strand
Strand 2
B
243 247anti-parallel
Strand 3
B
293 298anti-parallel
Strand 4
B
50 64anti-parallel
Strand 5
B
215 230anti-parallel
Strand 6
B
273 277anti-parallel
Strand 7
B
267 268anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 257first strand
Strand 2
B
243 247anti-parallel
Strand 3
B
293 298anti-parallel
Strand 4
B
50 64anti-parallel
Strand 5
B
215 230anti-parallel
Strand 6
B
281 282anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 71first strand
Strand 2
B
204 205anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 75first strand
Strand 2
B
88 91anti-parallel
Strand 3
B
185 187anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il