Analysis of interatomic Contacts of Structural Units in PDB entry:
3FRP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3FRP entry

There are 3 chains in PDB entry 3FRP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	PRO 623
G	PHE 717	ASP 946
B	LEU 1251	CYS 1618

There are 13 helices in PDB entry 3FRP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	54	58	Right-handed 310
Helix 2	2	A	273	281	Right-handed alpha
Helix 3	3	A	360	363	Right-handed 310
Helix 4	4	A	399	403	Right-handed 310
Helix 5	5	A	447	452	Right-handed alpha
Helix 6	6	A	489	493	Right-handed 310
Helix 7	7	A	560	566	Right-handed alpha
Helix 8	8	A	572	582	Right-handed alpha
Helix 9	9	A	594	602	Right-handed alpha
Helix 10	10	B	1371	1380	Right-handed alpha
Helix 11	11	B	1485	1493	Right-handed alpha
Helix 12	12	B	1544	1548	Right-handed 310
Helix 13	13	B	1599	1617	Right-handed alpha

There are 26 sheets in PDB entry 3FRP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	61	first strand
Strand 2	A	20	24	anti-parallel
Strand 3	A	2	8	anti-parallel
Strand 4	A	604	608	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	12	first strand
Strand 2	A	91	100	parallel
Strand 3	A	81	88	anti-parallel
Strand 4	A	30	39	anti-parallel
Strand 5	A	45	53	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	17	18	first strand
Strand 2	A	64	65	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	110	first strand
Strand 2	A	123	127	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	188	194	parallel
Strand 3	A	173	181	anti-parallel
Strand 4	A	139	144	anti-parallel
Strand 5	A	150	152	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	115	first strand
Strand 2	A	188	194	parallel
Strand 3	A	173	181	anti-parallel
Strand 4	A	139	144	anti-parallel
Strand 5	A	155	156	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	164	165	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	208	first strand
Strand 2	A	221	229	anti-parallel
Strand 3	A	267	272	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	306	317	parallel
Strand 3	A	291	300	anti-parallel
Strand 4	A	237	247	anti-parallel
Strand 5	A	250	253	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	214	first strand
Strand 2	A	306	317	parallel
Strand 3	A	291	300	anti-parallel
Strand 4	A	237	247	anti-parallel
Strand 5	A	259	263	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	338	345	anti-parallel
Strand 3	A	373	378	anti-parallel

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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	405	412	parallel
Strand 3	A	386	393	anti-parallel
Strand 4	A	356	359	anti-parallel
Strand 5	A	364	367	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	426	first strand
Strand 2	A	437	445	anti-parallel
Strand 3	A	481	487	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	474	first strand
Strand 2	A	456	463	anti-parallel
Strand 3	A	495	504	anti-parallel
Strand 4	A	508	517	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	529	first strand
Strand 2	A	540	547	anti-parallel
Strand 3	G	750	757	anti-parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	732	739	first strand
Strand 2	A	552	559	anti-parallel
Strand 3	G	763	773	anti-parallel
Strand 4	G	777	780	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	732	739	first strand
Strand 2	A	552	559	anti-parallel
Strand 3	G	763	773	anti-parallel
Strand 4	G	784	788	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	792	796	first strand
Strand 2	G	808	816	anti-parallel
Strand 3	G	854	864	anti-parallel
Strand 4	G	834	835	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	802	803	first strand
Strand 2	G	884	894	parallel
Strand 3	G	868	878	anti-parallel
Strand 4	G	822	828	anti-parallel
Strand 5	G	844	850	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	898	908	first strand
Strand 2	B	1300	1309	anti-parallel
Strand 3	G	938	943	anti-parallel
Strand 4	B	1282	1283	anti-parallel

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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	920	923	first strand
Strand 2	B	1289	1292	anti-parallel
Strand 3	B	1255	1258	anti-parallel
Strand 4	B	1266	1268	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1321	1329	first strand
Strand 2	B	1341	1349	anti-parallel
Strand 3	B	1414	1422	anti-parallel
Strand 4	B	1368	1370	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1400	1408	first strand
Strand 2	B	1355	1363	anti-parallel
Strand 3	B	1432	1438	anti-parallel
Strand 4	B	1441	1450	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1391	1392	first strand
Strand 2	B	1395	1396	anti-parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1461	1464	first strand
Strand 2	B	1467	1470	anti-parallel

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There are 6 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1575	1578	first strand
Strand 2	B	1539	1542	parallel
Strand 3	B	1517	1527	anti-parallel
Strand 4	B	1500	1510	anti-parallel
Strand 5	B	1558	1563	anti-parallel
Strand 6	B	1584	1588	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3FRP

Analysis of interatomic Contacts of Structural Units in PDB entry:
3FRP