Analysis of interatomic Contacts of Structural Units in PDB entry:
3FTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FTP entry

There are 4 chains in PDB entry 3FTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2SER 249
B
 ASP 2SER 249
C
 ASP 2SER 249
D
 ASP 2SER 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 3FTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
40 54Right-handed alpha
Helix 3
3
A
67 83Right-handed alpha
Helix 4
4
A
104 116Right-handed alpha
Helix 5
5
A
116 134Right-handed alpha
Helix 6
6
A
143 149Right-handed alpha
Helix 7
7
A
153 175Right-handed alpha
Helix 8
8
A
191 197Right-handed alpha
Helix 9
9
A
198 207Right-handed alpha
Helix 10
10
A
216 229Right-handed alpha
Helix 11
11
A
230 233Right-handed 310
Helix 12
12
B
17 30Right-handed alpha
Helix 13
13
B
40 54Right-handed alpha
Helix 14
14
B
67 83Right-handed alpha
Helix 15
15
B
99 103Right-handed 310
Helix 16
16
B
104 116Right-handed alpha
Helix 17
17
B
116 134Right-handed alpha
Helix 18
18
B
143 149Right-handed alpha
Helix 19
19
B
153 175Right-handed alpha
Helix 20
20
B
191 196Right-handed alpha
Helix 21
21
B
198 208Right-handed alpha
Helix 22
22
B
216 229Right-handed alpha
Helix 23
23
B
230 233Right-handed 310
Helix 24
24
C
17 30Right-handed alpha
Helix 25
25
C
40 54Right-handed alpha
Helix 26
26
C
67 83Right-handed alpha
Helix 27
27
C
99 103Right-handed 310
Helix 28
28
C
104 116Right-handed alpha
Helix 29
29
C
116 134Right-handed alpha
Helix 30
30
C
143 149Right-handed alpha
Helix 31
31
C
153 175Right-handed alpha
Helix 32
32
C
176 178Right-handed 310
Helix 33
33
C
200 208Right-handed alpha
Helix 34
34
C
216 229Right-handed alpha
Helix 35
35
C
230 233Right-handed 310
Helix 36
36
D
17 30Right-handed alpha
Helix 37
37
D
40 54Right-handed alpha
Helix 38
38
D
67 83Right-handed alpha
Helix 39
39
D
99 103Right-handed 310
Helix 40
40
D
104 116Right-handed alpha
Helix 41
41
D
116 134Right-handed alpha
Helix 42
42
D
144 149Right-handed alpha
Helix 43
43
D
153 175Right-handed alpha
Helix 44
44
D
176 178Right-handed 310
Helix 45
45
D
201 208Right-handed alpha
Helix 46
46
D
216 229Right-handed alpha
Helix 47
47
D
230 233Right-handed 310
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There are 4 sheets in PDB entry 3FTP. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
33 38parallel
Strand 3
A
9 12parallel
Strand 4
A
87 90parallel
Strand 5
A
136 141parallel
Strand 6
A
179 186parallel
Strand 7
A
239 242parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
33 38parallel
Strand 3
B
9 13parallel
Strand 4
B
87 90parallel
Strand 5
B
136 141parallel
Strand 6
B
179 186parallel
Strand 7
B
239 242parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
59 62first strand
Strand 2
C
33 38parallel
Strand 3
C
9 12parallel
Strand 4
C
87 90parallel
Strand 5
C
137 141parallel
Strand 6
C
180 186parallel
Strand 7
C
239 242parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
59 62first strand
Strand 2
D
33 38parallel
Strand 3
D
9 13parallel
Strand 4
D
87 90parallel
Strand 5
D
137 141parallel
Strand 6
D
180 186parallel
Strand 7
D
239 242parallel
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