Analysis of interatomic Contacts of Structural Units in PDB entry:
3FV9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3FV9 entry

There are 8 chains in PDB entry 3FV9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	LEU 1	GLY 373
A	LEU 1	ASP 374
D	LEU 1	GLY 373
E	LEU 1	GLY 373
F	LEU 1	GLY 373
B	LEU 1	GLY 373
H	LEU 1	ASP 374
C	LEU 1	ASP 374

There are113 helices in PDB entry 3FV9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	G	61	77	Right-handed alpha
Helix 2	2	G	83	95	Right-handed alpha
Helix 3	3	G	98	118	Right-handed alpha
Helix 4	4	G	120	125	Right-handed alpha
Helix 5	5	G	143	157	Right-handed alpha
Helix 6	6	G	173	186	Right-handed alpha
Helix 7	7	G	204	215	Right-handed alpha
Helix 8	8	G	229	238	Right-handed alpha
Helix 9	9	G	252	262	Right-handed alpha
Helix 10	10	G	272	276	Right-handed alpha
Helix 11	11	G	277	291	Right-handed alpha
Helix 12	12	G	303	316	Right-handed alpha
Helix 13	13	G	328	331	Right-handed 310
Helix 14	14	G	362	366	Right-handed 310
Helix 15	15	A	61	77	Right-handed alpha
Helix 16	16	A	83	95	Right-handed alpha
Helix 17	17	A	98	118	Right-handed alpha
Helix 18	18	A	120	125	Right-handed alpha
Helix 19	19	A	143	157	Right-handed alpha
Helix 20	20	A	173	187	Right-handed alpha
Helix 21	21	A	204	215	Right-handed alpha
Helix 22	22	A	229	238	Right-handed alpha
Helix 23	23	A	252	262	Right-handed alpha
Helix 24	24	A	272	276	Right-handed alpha
Helix 25	25	A	277	292	Right-handed alpha
Helix 26	26	A	303	316	Right-handed alpha
Helix 27	27	A	327	331	Right-handed 310
Helix 28	28	A	362	366	Right-handed 310
Helix 29	29	D	23	25	Right-handed 310
Helix 30	30	D	61	77	Right-handed alpha
Helix 31	31	D	83	95	Right-handed alpha
Helix 32	32	D	98	118	Right-handed alpha
Helix 33	33	D	120	124	Right-handed 310
Helix 34	34	D	143	158	Right-handed alpha
Helix 35	35	D	173	187	Right-handed alpha
Helix 36	36	D	204	215	Right-handed alpha
Helix 37	37	D	229	238	Right-handed alpha
Helix 38	38	D	252	262	Right-handed alpha
Helix 39	39	D	272	276	Right-handed alpha
Helix 40	40	D	277	292	Right-handed alpha
Helix 41	41	D	303	316	Right-handed alpha
Helix 42	42	D	328	331	Right-handed 310
Helix 43	43	D	362	365	Right-handed 310
Helix 44	44	E	61	77	Right-handed alpha
Helix 45	45	E	83	95	Right-handed alpha
Helix 46	46	E	98	117	Right-handed alpha
Helix 47	47	E	120	125	Right-handed alpha
Helix 48	48	E	143	157	Right-handed alpha
Helix 49	49	E	173	186	Right-handed alpha
Helix 50	50	E	204	215	Right-handed alpha
Helix 51	51	E	229	238	Right-handed alpha
Helix 52	52	E	252	262	Right-handed alpha
Helix 53	53	E	272	276	Right-handed alpha
Helix 54	54	E	277	292	Right-handed alpha
Helix 55	55	E	303	316	Right-handed alpha
Helix 56	56	E	327	331	Right-handed 310
Helix 57	57	E	362	365	Right-handed 310
Helix 58	58	F	61	77	Right-handed alpha
Helix 59	59	F	83	95	Right-handed alpha
Helix 60	60	F	98	117	Right-handed alpha
Helix 61	61	F	120	125	Right-handed alpha
Helix 62	62	F	143	157	Right-handed alpha
Helix 63	63	F	173	187	Right-handed alpha
Helix 64	64	F	204	215	Right-handed alpha
Helix 65	65	F	229	238	Right-handed alpha
Helix 66	66	F	252	262	Right-handed alpha
Helix 67	67	F	272	276	Right-handed alpha
Helix 68	68	F	277	292	Right-handed alpha
Helix 69	69	F	303	316	Right-handed alpha
Helix 70	70	F	327	331	Right-handed 310
Helix 71	71	F	361	366	Right-handed alpha
Helix 72	72	B	61	77	Right-handed alpha
Helix 73	73	B	83	95	Right-handed alpha
Helix 74	74	B	98	118	Right-handed alpha
Helix 75	75	B	120	125	Right-handed alpha
Helix 76	76	B	143	158	Right-handed alpha
Helix 77	77	B	173	187	Right-handed alpha
Helix 78	78	B	204	215	Right-handed alpha
Helix 79	79	B	229	239	Right-handed alpha
Helix 80	80	B	252	262	Right-handed alpha
Helix 81	81	B	272	276	Right-handed alpha
Helix 82	82	B	277	292	Right-handed alpha
Helix 83	83	B	303	316	Right-handed alpha
Helix 84	84	B	327	331	Right-handed 310
Helix 85	85	B	362	365	Right-handed 310
Helix 86	86	H	61	77	Right-handed alpha
Helix 87	87	H	83	95	Right-handed alpha
Helix 88	88	H	98	117	Right-handed alpha
Helix 89	89	H	120	125	Right-handed alpha
Helix 90	90	H	143	157	Right-handed alpha
Helix 91	91	H	173	187	Right-handed alpha
Helix 92	92	H	204	215	Right-handed alpha
Helix 93	93	H	229	238	Right-handed alpha
Helix 94	94	H	252	262	Right-handed alpha
Helix 95	95	H	272	276	Right-handed alpha
Helix 96	96	H	277	291	Right-handed alpha
Helix 97	97	H	303	316	Right-handed alpha
Helix 98	98	H	328	331	Right-handed 310
Helix 99	99	H	362	365	Right-handed 310
Helix 100	100	C	61	77	Right-handed alpha
Helix 101	101	C	83	95	Right-handed alpha
Helix 102	102	C	98	118	Right-handed alpha
Helix 103	103	C	120	125	Right-handed alpha
Helix 104	104	C	143	157	Right-handed alpha
Helix 105	105	C	173	187	Right-handed alpha
Helix 106	106	C	204	215	Right-handed alpha
Helix 107	107	C	229	238	Right-handed alpha
Helix 108	108	C	252	262	Right-handed alpha
Helix 109	109	C	272	276	Right-handed alpha
Helix 110	110	C	277	291	Right-handed alpha
Helix 111	111	C	303	316	Right-handed alpha
Helix 112	112	C	327	332	Right-handed 310
Helix 113	113	C	362	365	Right-handed 310

There are 35 sheets in PDB entry 3FV9. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	50	first strand
Strand 2	G	30	40	anti-parallel
Strand 3	G	3	14	anti-parallel
Strand 4	G	370	372	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	20	22	first strand
Strand 2	G	26	28	anti-parallel

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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	139	first strand
Strand 2	G	161	165	parallel
Strand 3	G	194	198	parallel
Strand 4	G	222	224	parallel
Strand 5	G	244	246	parallel
Strand 6	G	267	271	parallel
Strand 7	G	294	298	parallel
Strand 8	G	322	326	parallel
Strand 9	G	135	139	parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	337	338	first strand
Strand 2	G	359	360	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	50	first strand
Strand 2	A	30	40	anti-parallel
Strand 3	A	3	14	anti-parallel
Strand 4	A	370	373	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	347	348	anti-parallel

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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	139	first strand
Strand 2	A	161	165	parallel
Strand 3	A	194	198	parallel
Strand 4	A	222	224	parallel
Strand 5	A	244	246	parallel
Strand 6	A	267	271	parallel
Strand 7	A	294	298	parallel
Strand 8	A	322	325	parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	359	360	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	50	first strand
Strand 2	D	30	40	anti-parallel
Strand 3	D	3	14	anti-parallel
Strand 4	D	370	372	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	22	first strand
Strand 2	D	26	28	anti-parallel

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There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	139	first strand
Strand 2	D	161	165	parallel
Strand 3	D	194	198	parallel
Strand 4	D	222	224	parallel
Strand 5	D	244	246	parallel
Strand 6	D	267	271	parallel
Strand 7	D	294	298	parallel
Strand 8	D	322	326	parallel
Strand 9	D	135	139	parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	338	first strand
Strand 2	D	359	360	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	50	first strand
Strand 2	E	30	40	anti-parallel
Strand 3	E	3	14	anti-parallel
Strand 4	E	370	372	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	22	first strand
Strand 2	E	26	28	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	134	first strand
Strand 2	E	347	348	anti-parallel

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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	139	first strand
Strand 2	E	161	165	parallel
Strand 3	E	194	198	parallel
Strand 4	E	222	224	parallel
Strand 5	E	244	246	parallel
Strand 6	E	267	271	parallel
Strand 7	E	294	298	parallel
Strand 8	E	322	325	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	338	first strand
Strand 2	E	359	360	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	50	first strand
Strand 2	F	30	40	anti-parallel
Strand 3	F	3	14	anti-parallel
Strand 4	F	370	372	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	20	21	first strand
Strand 2	F	27	28	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	133	134	first strand
Strand 2	F	347	348	anti-parallel

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There are 8 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	137	139	first strand
Strand 2	F	161	165	parallel
Strand 3	F	194	198	parallel
Strand 4	F	222	224	parallel
Strand 5	F	244	246	parallel
Strand 6	F	267	271	parallel
Strand 7	F	294	298	parallel
Strand 8	F	322	325	parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	337	338	first strand
Strand 2	F	359	360	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	50	first strand
Strand 2	B	30	40	anti-parallel
Strand 3	B	3	14	anti-parallel
Strand 4	B	370	372	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	347	348	anti-parallel

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There are 8 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	139	first strand
Strand 2	B	161	165	parallel
Strand 3	B	194	198	parallel
Strand 4	B	222	224	parallel
Strand 5	B	244	246	parallel
Strand 6	B	267	271	parallel
Strand 7	B	294	298	parallel
Strand 8	B	322	325	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	338	first strand
Strand 2	B	359	360	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	50	first strand
Strand 2	H	30	40	anti-parallel
Strand 3	H	3	14	anti-parallel
Strand 4	H	370	373	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	20	22	first strand
Strand 2	H	26	28	anti-parallel

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There are 9 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	139	first strand
Strand 2	H	161	165	parallel
Strand 3	H	194	198	parallel
Strand 4	H	222	224	parallel
Strand 5	H	244	246	parallel
Strand 6	H	267	271	parallel
Strand 7	H	294	298	parallel
Strand 8	H	322	326	parallel
Strand 9	H	135	139	parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	337	338	first strand
Strand 2	H	359	360	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	50	first strand
Strand 2	C	30	40	anti-parallel
Strand 3	C	3	14	anti-parallel
Strand 4	C	370	372	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	22	first strand
Strand 2	C	26	27	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	C	347	348	anti-parallel

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There are 8 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	139	first strand
Strand 2	C	161	165	parallel
Strand 3	C	194	198	parallel
Strand 4	C	222	224	parallel
Strand 5	C	244	246	parallel
Strand 6	C	267	271	parallel
Strand 7	C	294	298	parallel
Strand 8	C	322	325	parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	338	first strand
Strand 2	C	359	360	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3FV9

Analysis of interatomic Contacts of Structural Units in PDB entry:
3FV9