Analysis of interatomic Contacts of Structural Units in PDB entry:
3FVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FVD entry

There are 2 chains in PDB entry 3FVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 0GLU 369
A
 SER 0GLU 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 3FVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
61 77Right-handed alpha
Helix 2
2
B
83 95Right-handed alpha
Helix 3
3
B
98 118Right-handed alpha
Helix 4
4
B
120 125Right-handed alpha
Helix 5
5
B
143 157Right-handed alpha
Helix 6
6
B
170 184Right-handed alpha
Helix 7
7
B
200 209Right-handed alpha
Helix 8
8
B
223 234Right-handed alpha
Helix 9
9
B
246 256Right-handed alpha
Helix 10
10
B
265 270Right-handed alpha
Helix 11
11
B
271 286Right-handed alpha
Helix 12
12
B
297 310Right-handed alpha
Helix 13
13
B
312 316Right-handed 310
Helix 14
14
B
321 326Right-handed 310
Helix 15
15
B
356 360Right-handed 310
Helix 16
16
A
61 77Right-handed alpha
Helix 17
17
A
83 95Right-handed alpha
Helix 18
18
A
98 118Right-handed alpha
Helix 19
19
A
120 125Right-handed alpha
Helix 20
20
A
143 158Right-handed alpha
Helix 21
21
A
170 184Right-handed alpha
Helix 22
22
A
200 209Right-handed alpha
Helix 23
23
A
223 234Right-handed alpha
Helix 24
24
A
246 257Right-handed alpha
Helix 25
25
A
265 270Right-handed alpha
Helix 26
26
A
271 286Right-handed alpha
Helix 27
27
A
297 310Right-handed alpha
Helix 28
28
A
312 316Right-handed 310
Helix 29
29
A
321 326Right-handed 310
Helix 30
30
A
356 361Right-handed alpha
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There are 6 sheets in PDB entry 3FVD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 50first strand
Strand 2
B
27 40anti-parallel
Strand 3
B
3 20anti-parallel
Strand 4
B
365 368anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 134first strand
Strand 2
B
342 343anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
136 139first strand
Strand 2
B
161 165parallel
Strand 3
B
190 194parallel
Strand 4
B
216 218parallel
Strand 5
B
238 240parallel
Strand 6
B
261 264parallel
Strand 7
B
288 291parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 50first strand
Strand 2
A
30 40anti-parallel
Strand 3
A
3 14anti-parallel
Strand 4
A
365 368anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
342 343anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 139first strand
Strand 2
A
161 165parallel
Strand 3
A
190 194parallel
Strand 4
A
217 218parallel
Strand 5
A
238 240parallel
Strand 6
A
261 264parallel
Strand 7
A
288 291parallel
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