Analysis of interatomic Contacts of Structural Units in PDB entry:
3FVG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FVG entry

There are 2 chains in PDB entry 3FVG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 415PRO 790
B
 ALA 415PRO 790
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3FVG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
440 443Right-handed 310
Helix 2
2
A
447 461Right-handed alpha
Helix 3
3
A
484 492Right-handed alpha
Helix 4
4
A
505 510Right-handed alpha
Helix 5
5
A
655 662Right-handed alpha
Helix 6
6
A
673 682Right-handed alpha
Helix 7
7
A
684 697Right-handed alpha
Helix 8
8
A
697 702Right-handed alpha
Helix 9
9
A
705 716Right-handed alpha
Helix 10
10
A
724 732Right-handed alpha
Helix 11
11
A
759 773Right-handed alpha
Helix 12
12
A
774 785Right-handed alpha
Helix 13
13
B
440 443Right-handed 310
Helix 14
14
B
447 461Right-handed alpha
Helix 15
15
B
484 492Right-handed alpha
Helix 16
16
B
505 510Right-handed alpha
Helix 17
17
B
655 662Right-handed alpha
Helix 18
18
B
673 682Right-handed alpha
Helix 19
19
B
684 697Right-handed alpha
Helix 20
20
B
697 701Right-handed alpha
Helix 21
21
B
705 716Right-handed alpha
Helix 22
22
B
724 732Right-handed alpha
Helix 23
23
B
758 773Right-handed alpha
Helix 24
24
B
774 785Right-handed alpha
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There are 10 sheets in PDB entry 3FVG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 468first strand
Strand 2
A
419 423parallel
Strand 3
A
497 498parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
445 446anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
512 514first strand
Strand 2
A
752 754anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 521first strand
Strand 2
A
747 749anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
666 668first strand
Strand 2
A
718 723parallel
Strand 3
A
523 528anti-parallel
Strand 4
A
737 740anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
464 468first strand
Strand 2
B
419 423parallel
Strand 3
B
497 498parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
431 432first strand
Strand 2
B
445 446anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
512 514first strand
Strand 2
B
752 754anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
519 521first strand
Strand 2
B
747 749anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
702 703first strand
Strand 2
B
666 670parallel
Strand 3
B
718 723parallel
Strand 4
B
523 528anti-parallel
Strand 5
B
737 740anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il