Analysis of interatomic Contacts of Structural Units in PDB entry:
3FYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3FYS entry

There is 1 chain in PDB entry 3FYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0LYS 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3FYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
14 22Right-handed alpha
Helix 3
3
A
44 54Right-handed alpha
Helix 4
4
A
65 77Right-handed alpha
Helix 5
5
A
94 102Right-handed alpha
Helix 6
6
A
103 106Right-handed 310
Helix 7
7
A
119 136Right-handed alpha
Helix 8
8
A
140 152Right-handed alpha
Helix 9
9
A
164 171Right-handed alpha
Helix 10
10
A
173 181Right-handed alpha
Helix 11
11
A
205 222Right-handed alpha
Helix 12
12
A
236 251Right-handed alpha
Helix 13
13
A
262 270Right-handed alpha
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There are 4 sheets in PDB entry 3FYS. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 26first strand
Strand 2
A
3 8parallel
Strand 3
A
82 87parallel
Strand 4
A
110 115parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 38first strand
Strand 2
A
29 31anti-parallel
Strand 3
A
60 62anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 160first strand
Strand 2
A
274 280anti-parallel
Strand 3
A
227 233anti-parallel
Strand 4
A
254 260parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 193first strand
Strand 2
A
196 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il