Analysis of interatomic Contacts of Structural Units in PDB entry:
3G2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G2F entry

There are 8 chains in PDB entry 3G2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 197LEU 287
A
 LYS 289ASP 396
A
 GLU 398GLN 495
A
 ALA 497ARG 510
B
 LEU 198LEU 287
B
 LYS 289ASP 396
B
 GLU 398GLN 495
B
 ALA 497SER 513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3G2F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
236 248Right-handed alpha
Helix 2
2
A
286 294Right-handed alpha
Helix 3
3
A
297 317Right-handed alpha
Helix 4
4
A
321 325Right-handed 310
Helix 5
5
A
379 383Right-handed 310
Helix 6
6
A
384 389Right-handed alpha
Helix 7
7
A
393 395Right-handed 310
Helix 8
8
A
396 418Right-handed alpha
Helix 9
9
A
419 424Right-handed 310
Helix 10
10
A
436 441Right-handed alpha
Helix 11
11
A
445 454Right-handed alpha
Helix 12
12
A
470 484Right-handed alpha
Helix 13
13
A
487 491Right-handed 310
Helix 14
14
A
493 507Right-handed alpha
Helix 15
15
B
236 249Right-handed alpha
Helix 16
16
B
286 294Right-handed alpha
Helix 17
17
B
297 317Right-handed alpha
Helix 18
18
B
379 383Right-handed 310
Helix 19
19
B
384 390Right-handed alpha
Helix 20
20
B
393 395Right-handed 310
Helix 21
21
B
396 418Right-handed alpha
Helix 22
22
B
419 424Right-handed 310
Helix 23
23
B
436 441Right-handed alpha
Helix 24
24
B
445 454Right-handed alpha
Helix 25
25
B
470 484Right-handed alpha
Helix 26
26
B
487 491Right-handed 310
Helix 27
27
B
493 506Right-handed alpha
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There are 6 sheets in PDB entry 3G2F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 211first strand
Strand 2
A
215 222anti-parallel
Strand 3
A
225 233anti-parallel
Strand 4
A
273 279anti-parallel
Strand 5
A
260 267anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
356 357anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
347 349anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 211first strand
Strand 2
B
216 222anti-parallel
Strand 3
B
225 233anti-parallel
Strand 4
B
273 279anti-parallel
Strand 5
B
260 267anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
329 330first strand
Strand 2
B
356 357anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
347 349anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il