Analysis of interatomic Contacts of Structural Units in PDB entry:
3G40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G40 entry

There is 1 chain in PDB entry 3G40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 492LEU 760
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 3G40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
502 518Right-handed alpha
Helix 2
2
A
536 551Right-handed alpha
Helix 3
3
A
566 577Right-handed alpha
Helix 4
4
A
593 595Right-handed 310
Helix 5
5
A
596 610Right-handed alpha
Helix 6
6
A
651 666Right-handed alpha
Helix 7
7
A
677 696Right-handed alpha
Helix 8
8
A
730 742Right-handed alpha
Helix 9
9
A
755 760Right-handed alpha
Back to top of page

There is 1 sheet ( A) in PDB entry 3G40.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
554 559first strand
Strand 2
A
522 527parallel
Strand 3
A
495 500parallel
Strand 4
A
585 589parallel
Strand 5
A
613 618parallel
Strand 6
A
744 749anti-parallel
Strand 7
A
720 724parallel
Strand 8
A
630 634parallel
Strand 9
A
668 674parallel
Strand 10
A
701 705parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il