Analysis of interatomic Contacts of Structural Units in PDB entry:
3G5B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G5B entry

There is 1 chain in PDB entry 3G5B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 541ASP 942
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 3G5B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
586 594Right-handed 310
Helix 2
2
A
720 735Right-handed alpha
Helix 3
3
A
778 784Right-handed alpha
Helix 4
4
A
859 871Right-handed alpha
Helix 5
5
A
879 887Right-handed alpha
Helix 6
6
A
893 898Right-handed alpha
Helix 7
7
A
901 915Right-handed alpha
Helix 8
8
A
919 930Right-handed alpha
Helix 9
9
A
933 941Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 3G5B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 549first strand
Strand 2
A
578 584anti-parallel
Strand 3
A
605 608anti-parallel
Strand 4
A
678 685anti-parallel
Strand 5
A
598 600anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 549first strand
Strand 2
A
578 584anti-parallel
Strand 3
A
605 608anti-parallel
Strand 4
A
678 685anti-parallel
Strand 5
A
634 640anti-parallel
Strand 6
A
646 651anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
661 665first strand
Strand 2
A
669 674anti-parallel
Strand 3
A
618 623anti-parallel
Strand 4
A
563 567anti-parallel
Strand 5
A
554 558anti-parallel
Strand 6
A
849 851anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
736 738first strand
Strand 2
A
692 702anti-parallel
Strand 3
A
743 748anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
736 738first strand
Strand 2
A
692 702anti-parallel
Strand 3
A
709 718anti-parallel
Strand 4
A
791 798anti-parallel
Strand 5
A
766 768anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
775 777first strand
Strand 2
A
754 759anti-parallel
Strand 3
A
805 814anti-parallel
Strand 4
A
819 827anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il