Analysis of interatomic Contacts of Structural Units in PDB entry:
3G5C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3G5C entry

There are 2 chains in PDB entry 3G5C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 233	ASN 718
B	ASN 233	ASN 718

There are 26 helices in PDB entry 3G5C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	248	254	Right-handed alpha
Helix 2	2	A	258	281	Right-handed alpha
Helix 3	3	A	304	319	Right-handed alpha
Helix 4	4	A	362	379	Right-handed alpha
Helix 5	5	A	383	390	Right-handed alpha
Helix 6	6	A	415	428	Right-handed alpha
Helix 7	7	A	431	436	Right-handed 310
Helix 8	8	A	462	467	Right-handed alpha
Helix 9	9	A	549	559	Right-handed alpha
Helix 10	10	A	566	574	Right-handed alpha
Helix 11	11	A	594	598	Right-handed 310
Helix 12	12	A	672	675	Right-handed 310
Helix 13	13	A	687	690	Right-handed 310
Helix 14	14	B	248	254	Right-handed alpha
Helix 15	15	B	258	281	Right-handed alpha
Helix 16	16	B	304	319	Right-handed alpha
Helix 17	17	B	362	379	Right-handed alpha
Helix 18	18	B	383	390	Right-handed alpha
Helix 19	19	B	415	428	Right-handed alpha
Helix 20	20	B	431	436	Right-handed 310
Helix 21	21	B	462	467	Right-handed alpha
Helix 22	22	B	549	559	Right-handed alpha
Helix 23	23	B	566	574	Right-handed alpha
Helix 24	24	B	594	598	Right-handed 310
Helix 25	25	B	672	675	Right-handed 310
Helix 26	26	B	687	690	Right-handed 310

There are 18 sheets in PDB entry 3G5C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	292	first strand
Strand 2	A	239	247	parallel
Strand 3	A	326	331	parallel
Strand 4	A	355	359	parallel
Strand 5	A	341	343	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	474	475	first strand
Strand 2	A	478	479	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	502	504	first strand
Strand 2	A	514	515	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	535	first strand
Strand 2	A	540	543	anti-parallel
Strand 3	A	546	548	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	617	first strand
Strand 2	A	640	641	anti-parallel
Strand 3	A	647	648	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	628	first strand
Strand 2	A	631	637	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	658	first strand
Strand 2	A	661	663	anti-parallel
Strand 3	A	668	670	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	692	694	first strand
Strand 2	A	700	702	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	706	707	first strand
Strand 2	A	713	714	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	292	first strand
Strand 2	B	239	247	parallel
Strand 3	B	326	331	parallel
Strand 4	B	355	359	parallel
Strand 5	B	341	343	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	474	475	first strand
Strand 2	B	478	479	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	504	first strand
Strand 2	B	514	515	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	535	first strand
Strand 2	B	540	543	anti-parallel
Strand 3	B	546	548	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	616	617	first strand
Strand 2	B	640	641	anti-parallel
Strand 3	B	647	648	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	622	628	first strand
Strand 2	B	631	637	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	656	658	first strand
Strand 2	B	661	663	anti-parallel
Strand 3	B	668	670	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	692	694	first strand
Strand 2	B	700	702	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	706	707	first strand
Strand 2	B	713	714	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3G5C

Analysis of interatomic Contacts of Structural Units in PDB entry:
3G5C