Analysis of interatomic Contacts of Structural Units in PDB entry:
3G5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G5L entry

There are 2 chains in PDB entry 3G5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23GLU 244
B
 LYS 26GLU 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 3G5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 36Right-handed alpha
Helix 2
2
A
54 63Right-handed alpha
Helix 3
3
A
74 85Right-handed alpha
Helix 4
4
A
96 100Right-handed 310
Helix 5
5
A
115 119Right-handed 310
Helix 6
6
A
121 132Right-handed alpha
Helix 7
7
A
145 150Right-handed alpha
Helix 8
8
A
193 204Right-handed alpha
Helix 9
9
A
217 221Right-handed 310
Helix 10
10
A
223 231Right-handed 310
Helix 11
11
B
26 36Right-handed alpha
Helix 12
12
B
54 63Right-handed alpha
Helix 13
13
B
74 84Right-handed alpha
Helix 14
14
B
96 100Right-handed 310
Helix 15
15
B
115 119Right-handed 310
Helix 16
16
B
121 132Right-handed alpha
Helix 17
17
B
145 150Right-handed alpha
Helix 18
18
B
193 204Right-handed alpha
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There are 5 sheets in PDB entry 3G5L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 94first strand
Strand 2
A
67 72parallel
Strand 3
A
45 49parallel
Strand 4
A
107 113parallel
Strand 5
A
133 144parallel
Strand 6
A
235 242anti-parallel
Strand 7
A
206 212anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
164 169anti-parallel
Strand 3
B
164 169anti-parallel
Strand 4
B
157 158anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 182first strand
Strand 2
A
185 190anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 94first strand
Strand 2
B
67 72parallel
Strand 3
B
45 49parallel
Strand 4
B
107 113parallel
Strand 5
B
133 144parallel
Strand 6
B
235 242anti-parallel
Strand 7
B
206 212anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 182first strand
Strand 2
B
185 190anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il