Analysis of interatomic Contacts of Structural Units in PDB entry:
3G5Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G5Q entry

There is 1 chain in PDB entry 3G5Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 438
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3G5Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 23Right-handed alpha
Helix 2
2
A
62 74Right-handed alpha
Helix 3
3
A
76 85Right-handed alpha
Helix 4
4
A
96 110Right-handed alpha
Helix 5
5
A
138 150Right-handed alpha
Helix 6
6
A
167 169Right-handed 310
Helix 7
7
A
170 174Right-handed 310
Helix 8
8
A
192 207Right-handed alpha
Helix 9
9
A
225 232Right-handed alpha
Helix 10
10
A
233 240Right-handed alpha
Helix 11
11
A
282 291Right-handed alpha
Helix 12
12
A
314 319Right-handed alpha
Helix 13
13
A
335 339Right-handed 310
Helix 14
14
A
342 362Right-handed alpha
Helix 15
15
A
373 385Right-handed alpha
Helix 16
16
A
396 400Right-handed 310
Helix 17
17
A
408 430Right-handed alpha
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There are 4 sheets in PDB entry 3G5Q. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 117first strand
Strand 2
A
27 30parallel
Strand 3
A
4 7parallel
Strand 4
A
129 131parallel
Strand 5
A
331 333parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
92 95anti-parallel
Strand 3
A
86 87anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 160first strand
Strand 2
A
306 313anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
187 191anti-parallel
Strand 3
A
258 264anti-parallel
Strand 4
A
271 274anti-parallel
Strand 5
A
163 165anti-parallel
Strand 6
A
301 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il