Analysis of interatomic Contacts of Structural Units in PDB entry:
3G5W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3G5W entry

There are 6 chains in PDB entry 3G5W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 44	ILE 361
B	GLU 44	ILE 361
C	GLU 44	ILE 361
D	GLU 44	ILE 361
E	GLU 44	ILE 361
F	GLU 44	ILE 361

There are 36 helices in PDB entry 3G5W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	111	115	Right-handed 310
Helix 2	2	A	150	158	Right-handed alpha
Helix 3	3	A	172	177	Right-handed alpha
Helix 4	4	A	190	194	Right-handed 310
Helix 5	5	A	297	301	Right-handed 310
Helix 6	6	A	342	346	Right-handed 310
Helix 7	7	B	111	115	Right-handed 310
Helix 8	8	B	150	158	Right-handed alpha
Helix 9	9	B	172	177	Right-handed alpha
Helix 10	10	B	190	194	Right-handed 310
Helix 11	11	B	297	300	Right-handed 310
Helix 12	12	B	342	346	Right-handed 310
Helix 13	13	C	111	115	Right-handed 310
Helix 14	14	C	150	158	Right-handed alpha
Helix 15	15	C	172	177	Right-handed alpha
Helix 16	16	C	190	194	Right-handed 310
Helix 17	17	C	297	301	Right-handed 310
Helix 18	18	C	342	346	Right-handed 310
Helix 19	19	D	111	115	Right-handed 310
Helix 20	20	D	150	158	Right-handed alpha
Helix 21	21	D	172	177	Right-handed alpha
Helix 22	22	D	190	194	Right-handed 310
Helix 23	23	D	297	301	Right-handed 310
Helix 24	24	D	342	346	Right-handed 310
Helix 25	25	E	111	115	Right-handed 310
Helix 26	26	E	150	158	Right-handed alpha
Helix 27	27	E	172	178	Right-handed alpha
Helix 28	28	E	190	194	Right-handed 310
Helix 29	29	E	297	300	Right-handed 310
Helix 30	30	E	342	346	Right-handed 310
Helix 31	31	F	111	115	Right-handed 310
Helix 32	32	F	150	158	Right-handed alpha
Helix 33	33	F	172	177	Right-handed alpha
Helix 34	34	F	190	194	Right-handed 310
Helix 35	35	F	297	301	Right-handed 310
Helix 36	36	F	342	346	Right-handed 310

There are 32 sheets in PDB entry 3G5W. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	70	first strand
Strand 2	A	45	60	anti-parallel
Strand 3	A	86	93	parallel
Strand 4	A	130	136	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	70	first strand
Strand 2	A	45	60	anti-parallel
Strand 3	A	359	360	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	104	first strand
Strand 2	A	141	146	anti-parallel
Strand 3	A	161	167	anti-parallel
Strand 4	A	78	82	parallel
Strand 5	A	349	351	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	212	first strand
Strand 2	A	180	189	anti-parallel
Strand 3	A	230	237	parallel
Strand 4	A	278	284	anti-parallel
Strand 5	A	252	257	anti-parallel
Strand 6	A	260	268	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	225	first strand
Strand 2	A	312	317	parallel
Strand 3	A	290	295	anti-parallel
Strand 4	A	243	247	anti-parallel
Strand 5	A	270	273	anti-parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	70	first strand
Strand 2	B	45	60	anti-parallel
Strand 3	B	86	93	parallel
Strand 4	B	130	136	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	70	first strand
Strand 2	B	45	60	anti-parallel
Strand 3	B	359	360	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	104	first strand
Strand 2	B	141	146	anti-parallel
Strand 3	B	161	167	anti-parallel
Strand 4	B	78	82	parallel
Strand 5	B	349	351	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	212	first strand
Strand 2	B	180	189	anti-parallel
Strand 3	B	230	237	parallel
Strand 4	B	278	284	anti-parallel
Strand 5	B	252	257	anti-parallel
Strand 6	B	260	268	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	225	first strand
Strand 2	B	312	317	parallel
Strand 3	B	290	295	anti-parallel
Strand 4	B	243	247	anti-parallel
Strand 5	B	270	273	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	303	first strand
Strand 2	B	306	307	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	70	first strand
Strand 2	C	45	60	anti-parallel
Strand 3	C	86	93	parallel
Strand 4	C	130	136	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	70	first strand
Strand 2	C	45	60	anti-parallel
Strand 3	C	359	360	anti-parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	104	first strand
Strand 2	C	141	146	anti-parallel
Strand 3	C	161	167	anti-parallel
Strand 4	C	78	82	parallel
Strand 5	C	349	351	anti-parallel

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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	212	first strand
Strand 2	C	180	189	anti-parallel
Strand 3	C	230	237	parallel
Strand 4	C	278	284	anti-parallel
Strand 5	C	252	257	anti-parallel
Strand 6	C	260	268	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	225	first strand
Strand 2	C	312	317	parallel
Strand 3	C	290	295	anti-parallel
Strand 4	C	243	247	anti-parallel
Strand 5	C	270	273	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	70	first strand
Strand 2	D	45	60	anti-parallel
Strand 3	D	86	93	parallel
Strand 4	D	130	136	anti-parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	70	first strand
Strand 2	D	45	60	anti-parallel
Strand 3	D	359	360	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	104	first strand
Strand 2	D	141	146	anti-parallel
Strand 3	D	161	167	anti-parallel
Strand 4	D	78	82	parallel
Strand 5	D	349	351	anti-parallel

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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	212	first strand
Strand 2	D	180	189	anti-parallel
Strand 3	D	230	237	parallel
Strand 4	D	278	284	anti-parallel
Strand 5	D	252	257	anti-parallel
Strand 6	D	260	268	anti-parallel

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There are 5 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	225	first strand
Strand 2	D	312	317	parallel
Strand 3	D	290	295	anti-parallel
Strand 4	D	243	247	anti-parallel
Strand 5	D	270	273	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	70	first strand
Strand 2	E	45	60	anti-parallel
Strand 3	E	86	93	parallel
Strand 4	E	130	136	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	70	first strand
Strand 2	E	45	60	anti-parallel
Strand 3	E	359	360	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	104	first strand
Strand 2	E	141	146	anti-parallel
Strand 3	E	161	167	anti-parallel
Strand 4	E	78	82	parallel
Strand 5	E	349	351	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	212	first strand
Strand 2	E	180	189	anti-parallel
Strand 3	E	230	237	parallel
Strand 4	E	278	284	anti-parallel
Strand 5	E	252	257	anti-parallel
Strand 6	E	260	268	anti-parallel

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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	223	225	first strand
Strand 2	E	312	317	parallel
Strand 3	E	290	295	anti-parallel
Strand 4	E	243	247	anti-parallel
Strand 5	E	270	273	anti-parallel

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There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	302	303	first strand
Strand 2	E	306	307	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	70	first strand
Strand 2	F	45	60	anti-parallel
Strand 3	F	86	93	parallel
Strand 4	F	130	136	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	70	first strand
Strand 2	F	45	60	anti-parallel
Strand 3	F	359	360	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	104	first strand
Strand 2	F	141	146	anti-parallel
Strand 3	F	161	167	anti-parallel
Strand 4	F	78	82	parallel
Strand 5	F	349	351	anti-parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	209	212	first strand
Strand 2	F	180	189	anti-parallel
Strand 3	F	230	237	parallel
Strand 4	F	278	284	anti-parallel
Strand 5	F	252	257	anti-parallel
Strand 6	F	260	268	anti-parallel

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There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	223	225	first strand
Strand 2	F	312	317	parallel
Strand 3	F	290	295	anti-parallel
Strand 4	F	243	247	anti-parallel
Strand 5	F	270	273	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3G5W

Analysis of interatomic Contacts of Structural Units in PDB entry:
3G5W