Analysis of interatomic Contacts of Structural Units in PDB entry:
3G61

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3G61 entry

There are 2 chains in PDB entry 3G61 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 33	ALA 1271
B	VAL 33	ALA 1271

There are 80 helices in PDB entry 3G61. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	35	40	Right-handed alpha
Helix 2	2	A	43	88	Right-handed alpha
Helix 3	3	A	92	152	Right-handed alpha
Helix 4	4	A	153	155	Right-handed 310
Helix 5	5	A	156	161	Right-handed alpha
Helix 6	6	A	165	206	Right-handed alpha
Helix 7	7	A	209	249	Right-handed alpha
Helix 8	8	A	256	262	Right-handed alpha
Helix 9	9	A	268	318	Right-handed alpha
Helix 10	10	A	327	367	Right-handed alpha
Helix 11	11	A	428	436	Right-handed alpha
Helix 12	12	A	458	465	Right-handed alpha
Helix 13	13	A	479	488	Right-handed alpha
Helix 14	14	A	492	503	Right-handed alpha
Helix 15	15	A	505	512	Right-handed alpha
Helix 16	16	A	514	518	Right-handed 310
Helix 17	17	A	528	544	Right-handed alpha
Helix 18	18	A	558	573	Right-handed alpha
Helix 19	19	A	584	590	Right-handed alpha
Helix 20	20	A	607	613	Right-handed alpha
Helix 21	21	A	616	626	Right-handed alpha
Helix 22	22	A	694	704	Right-handed alpha
Helix 23	23	A	707	737	Right-handed alpha
Helix 24	24	A	742	794	Right-handed alpha
Helix 25	25	A	797	802	Right-handed alpha
Helix 26	26	A	806	849	Right-handed alpha
Helix 27	27	A	852	899	Right-handed alpha
Helix 28	28	A	908	958	Right-handed alpha
Helix 29	29	A	969	989	Right-handed alpha
Helix 30	30	A	994	1010	Right-handed alpha
Helix 31	31	A	1042	1046	Right-handed 310
Helix 32	32	A	1071	1081	Right-handed alpha
Helix 33	33	A	1101	1106	Right-handed alpha
Helix 34	34	A	1122	1128	Right-handed alpha
Helix 35	35	A	1137	1148	Right-handed alpha
Helix 36	36	A	1150	1156	Right-handed alpha
Helix 37	37	A	1173	1189	Right-handed alpha
Helix 38	38	A	1203	1217	Right-handed alpha
Helix 39	39	A	1252	1259	Right-handed alpha
Helix 40	40	A	1261	1271	Right-handed alpha
Helix 41	41	B	35	40	Right-handed alpha
Helix 42	42	B	43	88	Right-handed alpha
Helix 43	43	B	92	152	Right-handed alpha
Helix 44	44	B	153	155	Right-handed 310
Helix 45	45	B	156	161	Right-handed alpha
Helix 46	46	B	165	206	Right-handed alpha
Helix 47	47	B	209	249	Right-handed alpha
Helix 48	48	B	256	262	Right-handed alpha
Helix 49	49	B	268	318	Right-handed alpha
Helix 50	50	B	327	367	Right-handed alpha
Helix 51	51	B	428	437	Right-handed alpha
Helix 52	52	B	458	465	Right-handed alpha
Helix 53	53	B	479	488	Right-handed alpha
Helix 54	54	B	492	503	Right-handed alpha
Helix 55	55	B	505	512	Right-handed alpha
Helix 56	56	B	514	518	Right-handed 310
Helix 57	57	B	528	544	Right-handed alpha
Helix 58	58	B	558	573	Right-handed alpha
Helix 59	59	B	584	590	Right-handed alpha
Helix 60	60	B	607	613	Right-handed alpha
Helix 61	61	B	616	626	Right-handed alpha
Helix 62	62	B	694	704	Right-handed alpha
Helix 63	63	B	707	737	Right-handed alpha
Helix 64	64	B	742	794	Right-handed alpha
Helix 65	65	B	797	802	Right-handed alpha
Helix 66	66	B	806	849	Right-handed alpha
Helix 67	67	B	852	899	Right-handed alpha
Helix 68	68	B	908	958	Right-handed alpha
Helix 69	69	B	969	989	Right-handed alpha
Helix 70	70	B	994	1009	Right-handed alpha
Helix 71	71	B	1042	1046	Right-handed 310
Helix 72	72	B	1071	1081	Right-handed alpha
Helix 73	73	B	1101	1106	Right-handed alpha
Helix 74	74	B	1122	1128	Right-handed alpha
Helix 75	75	B	1137	1148	Right-handed alpha
Helix 76	76	B	1150	1156	Right-handed alpha
Helix 77	77	B	1173	1189	Right-handed alpha
Helix 78	78	B	1203	1217	Right-handed alpha
Helix 79	79	B	1252	1259	Right-handed alpha
Helix 80	80	B	1261	1271	Right-handed alpha

There are 8 sheets in PDB entry 3G61. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	413	first strand
Strand 2	A	388	394	anti-parallel
Strand 3	A	444	449	anti-parallel
Strand 4	A	452	453	anti-parallel

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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	469	first strand
Strand 2	A	547	551	parallel
Strand 3	A	577	581	parallel
Strand 4	A	418	422	parallel
Strand 5	A	593	596	parallel
Strand 6	A	605	606	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1054	1056	first strand
Strand 2	A	1031	1037	anti-parallel
Strand 3	A	1087	1091	anti-parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1111	1112	first strand
Strand 2	A	1192	1196	parallel
Strand 3	A	1222	1226	parallel
Strand 4	A	1061	1065	parallel
Strand 5	A	1238	1243	parallel
Strand 6	A	1246	1251	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	413	first strand
Strand 2	B	388	394	anti-parallel
Strand 3	B	444	449	anti-parallel
Strand 4	B	452	453	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	469	first strand
Strand 2	B	547	551	parallel
Strand 3	B	577	581	parallel
Strand 4	B	418	422	parallel
Strand 5	B	593	596	parallel
Strand 6	B	605	606	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1055	1056	first strand
Strand 2	B	1031	1037	anti-parallel
Strand 3	B	1087	1091	anti-parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1111	1112	first strand
Strand 2	B	1192	1196	parallel
Strand 3	B	1222	1226	parallel
Strand 4	B	1061	1065	parallel
Strand 5	B	1238	1243	parallel
Strand 6	B	1246	1251	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3G61

Analysis of interatomic Contacts of Structural Units in PDB entry:
3G61