Analysis of interatomic Contacts of Structural Units in PDB entry:
3G6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G6M entry

There is 1 chain in PDB entry 3G6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 39SER 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3G6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
50 53Right-handed 310
Helix 2
2
A
58 62Right-handed 310
Helix 3
3
A
63 67Right-handed 310
Helix 4
4
A
87 93Right-handed alpha
Helix 5
5
A
109 122Right-handed alpha
Helix 6
6
A
139 144Right-handed alpha
Helix 7
7
A
146 165Right-handed alpha
Helix 8
8
A
178 204Right-handed alpha
Helix 9
9
A
218 223Right-handed alpha
Helix 10
10
A
226 234Right-handed alpha
Helix 11
11
A
264 268Right-handed 310
Helix 12
12
A
271 282Right-handed alpha
Helix 13
13
A
285 287Right-handed 310
Helix 14
14
A
326 328Right-handed 310
Helix 15
15
A
359 374Right-handed alpha
Helix 16
16
A
382 386Right-handed 310
Helix 17
17
A
388 391Right-handed 310
Helix 18
18
A
392 402Right-handed alpha
Helix 19
19
A
418 423Right-handed alpha
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There are 2 sheets in PDB entry 3G6M. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
69 77anti-parallel
Strand 3
A
126 132parallel
Strand 4
A
168 172parallel
Strand 5
A
210 216parallel
Strand 6
A
236 240parallel
Strand 7
A
289 294parallel
Strand 8
A
377 381parallel
Strand 9
A
42 48parallel
Strand 10
A
69 77parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
296 301anti-parallel
Strand 3
A
353 356anti-parallel
Strand 4
A
343 348anti-parallel
Strand 5
A
334 338anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il