Analysis of interatomic Contacts of Structural Units in PDB entry:
3G79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G79 entry

There are 2 chains in PDB entry 3G79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4HIS 478
B
 SER 4HIS 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3G79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 16Right-handed alpha
Helix 2
2
A
29 40Right-handed alpha
Helix 3
3
A
58 64Right-handed alpha
Helix 4
4
A
73 75Right-handed 310
Helix 5
5
A
76 87Right-handed alpha
Helix 6
6
A
95 102Right-handed 310
Helix 7
7
A
123 137Right-handed alpha
Helix 8
8
A
156 167Right-handed alpha
Helix 9
9
A
187 195Right-handed alpha
Helix 10
10
A
203 215Right-handed alpha
Helix 11
11
A
216 218Right-handed 310
Helix 12
12
A
228 259Right-handed alpha
Helix 13
13
A
262 272Right-handed alpha
Helix 14
14
A
292 306Right-handed alpha
Helix 15
15
A
320 346Right-handed alpha
Helix 16
16
A
374 386Right-handed alpha
Helix 17
17
A
407 413Right-handed alpha
Helix 18
18
A
424 429Right-handed alpha
Helix 19
19
A
431 440Right-handed alpha
Helix 20
20
A
454 460Right-handed alpha
Helix 21
21
B
6 16Right-handed alpha
Helix 22
22
B
29 39Right-handed alpha
Helix 23
23
B
57 64Right-handed alpha
Helix 24
24
B
76 87Right-handed alpha
Helix 25
25
B
123 137Right-handed alpha
Helix 26
26
B
156 167Right-handed alpha
Helix 27
27
B
187 195Right-handed alpha
Helix 28
28
B
203 215Right-handed alpha
Helix 29
29
B
216 218Right-handed 310
Helix 30
30
B
228 260Right-handed alpha
Helix 31
31
B
262 272Right-handed alpha
Helix 32
32
B
292 308Right-handed alpha
Helix 33
33
B
320 346Right-handed alpha
Helix 34
34
B
374 386Right-handed alpha
Helix 35
35
B
424 428Right-handed 310
Helix 36
36
B
431 440Right-handed alpha
Helix 37
37
B
454 460Right-handed alpha
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There are 4 sheets in PDB entry 3G79. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
45 49parallel
Strand 3
A
20 24parallel
Strand 4
A
104 107parallel
Strand 5
A
142 145parallel
Strand 6
A
175 178parallel
Strand 7
A
197 201anti-parallel
Strand 8
A
223 227parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
404 405first strand
Strand 2
A
388 392parallel
Strand 3
A
355 359parallel
Strand 4
A
417 420parallel
Strand 5
A
445 448parallel
Strand 6
A
464 467parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
45 49parallel
Strand 3
B
20 24parallel
Strand 4
B
104 107parallel
Strand 5
B
142 145parallel
Strand 6
B
175 178parallel
Strand 7
B
197 201anti-parallel
Strand 8
B
223 227parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
404 405first strand
Strand 2
B
388 392parallel
Strand 3
B
355 359parallel
Strand 4
B
417 420parallel
Strand 5
B
445 448parallel
Strand 6
B
464 467parallel
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