Analysis of interatomic Contacts of Structural Units in PDB entry:
3G87


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G87 entry

There is 1 chain in PDB entry 3G87 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ALA 293
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3G87. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 29Right-handed alpha
Helix 2
2
A
29 41Right-handed alpha
Helix 3
3
A
43 50Right-handed alpha
Helix 4
4
A
58 82Right-handed alpha
Helix 5
5
A
93 102Right-handed alpha
Helix 6
6
A
106 124Right-handed alpha
Helix 7
7
A
136 147Right-handed alpha
Helix 8
8
A
169 176Right-handed alpha
Helix 9
9
A
177 179Right-handed 310
Helix 10
10
A
197 199Right-handed 310
Helix 11
11
A
200 212Right-handed alpha
Helix 12
12
A
236 244Right-handed alpha
Helix 13
13
A
245 247Right-handed 310
Helix 14
14
A
250 265Right-handed alpha
Helix 15
15
A
278 290Right-handed alpha
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There are 2 sheets in PDB entry 3G87. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
87 90parallel
Strand 3
A
6 11parallel
Strand 4
A
269 273parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 159first strand
Strand 2
A
162 168anti-parallel
Strand 3
A
127 133anti-parallel
Strand 4
A
185 188anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il