Analysis of interatomic Contacts of Structural Units in PDB entry:
3G89


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G89 entry

There are 4 chains in PDB entry 3G89 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 2
A
 GLY 4CYS 249
B
 MET 1PHE 2
B
 GLY 4CYS 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 3G89. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 25Right-handed alpha
Helix 2
2
A
29 31Right-handed 310
Helix 3
3
A
32 46Right-handed alpha
Helix 4
4
A
57 71Right-handed alpha
Helix 5
5
A
72 75Right-handed 310
Helix 6
6
A
94 102Right-handed alpha
Helix 7
7
A
113 128Right-handed alpha
Helix 8
8
A
138 143Right-handed alpha
Helix 9
9
A
162 171Right-handed alpha
Helix 10
10
A
188 193Right-handed alpha
Helix 11
11
A
194 202Right-handed alpha
Helix 12
12
A
241 246Right-handed alpha
Helix 13
13
B
11 25Right-handed alpha
Helix 14
14
B
29 31Right-handed 310
Helix 15
15
B
32 46Right-handed alpha
Helix 16
16
B
58 71Right-handed alpha
Helix 17
17
B
72 75Right-handed 310
Helix 18
18
B
94 102Right-handed alpha
Helix 19
19
B
113 128Right-handed alpha
Helix 20
20
B
138 143Right-handed alpha
Helix 21
21
B
162 171Right-handed alpha
Helix 22
22
B
188 193Right-handed alpha
Helix 23
23
B
194 202Right-handed alpha
Helix 24
24
B
241 246Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3G89. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 136first strand
Strand 2
A
106 111parallel
Strand 3
A
83 87parallel
Strand 4
A
152 158parallel
Strand 5
A
174 184parallel
Strand 6
A
220 228anti-parallel
Strand 7
A
204 213anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 136first strand
Strand 2
B
106 111parallel
Strand 3
B
83 87parallel
Strand 4
B
152 158parallel
Strand 5
B
174 184parallel
Strand 6
B
220 228anti-parallel
Strand 7
B
204 213anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il