Analysis of interatomic Contacts of Structural Units in PDB entry:
3G8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G8D entry

There are 2 chains in PDB entry 3G8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 444
B
 MET 1LEU 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3G8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 25Right-handed alpha
Helix 2
2
A
39 45Right-handed alpha
Helix 3
3
A
55 59Right-handed 310
Helix 4
4
A
62 73Right-handed alpha
Helix 5
5
A
88 98Right-handed alpha
Helix 6
6
A
106 115Right-handed alpha
Helix 7
7
A
115 127Right-handed alpha
Helix 8
8
A
249 268Right-handed alpha
Helix 9
9
A
296 305Right-handed alpha
Helix 10
10
A
307 317Right-handed alpha
Helix 11
11
A
324 328Right-handed 310
Helix 12
12
A
394 409Right-handed alpha
Helix 13
13
A
417 426Right-handed alpha
Helix 14
14
A
427 433Right-handed alpha
Helix 15
15
A
438 444Right-handed alpha
Helix 16
16
B
10 25Right-handed alpha
Helix 17
17
B
39 45Right-handed alpha
Helix 18
18
B
55 59Right-handed 310
Helix 19
19
B
62 74Right-handed alpha
Helix 20
20
B
88 98Right-handed alpha
Helix 21
21
B
106 115Right-handed alpha
Helix 22
22
B
115 127Right-handed alpha
Helix 23
23
B
141 153Right-handed alpha
Helix 24
24
B
174 194Right-handed alpha
Helix 25
25
B
249 267Right-handed alpha
Helix 26
26
B
296 305Right-handed alpha
Helix 27
27
B
307 317Right-handed alpha
Helix 28
28
B
324 328Right-handed 310
Helix 29
29
B
394 409Right-handed alpha
Helix 30
30
B
417 426Right-handed alpha
Helix 31
31
B
427 433Right-handed alpha
Helix 32
32
B
438 444Right-handed alpha
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There are 11 sheets in PDB entry 3G8D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
27 33parallel
Strand 3
A
4 7parallel
Strand 4
A
77 79parallel
Strand 5
A
101 102parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 290first strand
Strand 2
A
270 280anti-parallel
Strand 3
A
208 217anti-parallel
Strand 4
A
222 234anti-parallel
Strand 5
A
237 243anti-parallel
Strand 6
A
333 340anti-parallel
Strand 7
A
384 392anti-parallel
Strand 8
A
365 368anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
376 377anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
410 412anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 52first strand
Strand 2
B
27 33parallel
Strand 3
B
4 7parallel
Strand 4
B
77 79parallel
Strand 5
B
101 102parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 172first strand
Strand 2
B
156 160anti-parallel
Strand 3
B
198 202anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 229first strand
Strand 2
B
208 217anti-parallel
Strand 3
B
270 280anti-parallel
Strand 4
B
283 290anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
237 238anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 243first strand
Strand 2
B
333 340anti-parallel
Strand 3
B
384 392anti-parallel
Strand 4
B
365 368anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 353first strand
Strand 2
B
376 377anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 358first strand
Strand 2
B
410 412anti-parallel
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