Analysis of interatomic Contacts of Structural Units in PDB entry:
3G8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G8K entry

There are 2 chains in PDB entry 3G8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 139HIS 265
B
 GLY 139HIS 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3G8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
162 173Right-handed alpha
Helix 2
2
A
182 193Right-handed alpha
Helix 3
3
A
215 217Right-handed 310
Helix 4
4
A
224 228Right-handed 310
Helix 5
5
A
229 233Right-handed 310
Helix 6
6
B
162 173Right-handed alpha
Helix 7
7
B
182 193Right-handed alpha
Helix 8
8
B
215 217Right-handed 310
Helix 9
9
B
224 228Right-handed 310
Helix 10
10
B
229 233Right-handed 310
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There are 3 sheets in PDB entry 3G8K. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
197 205anti-parallel
Strand 3
A
253 259parallel
Strand 4
A
152 156anti-parallel
Strand 5
A
145 149anti-parallel
Strand 6
B
145 149anti-parallel
Strand 7
B
152 156anti-parallel
Strand 8
B
253 259anti-parallel
Strand 9
B
198 205parallel
Strand 10
B
210 213anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
253 259anti-parallel
Strand 3
A
197 205parallel
Strand 4
A
235 239anti-parallel
Strand 5
A
243 246anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 177first strand
Strand 2
B
253 259anti-parallel
Strand 3
B
198 205parallel
Strand 4
B
235 238anti-parallel
Strand 5
B
243 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il