Analysis of interatomic Contacts of Structural Units in PDB entry:
3G8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G8L entry

There are 4 chains in PDB entry 3G8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 109HIS 265
B
 ILE 105HIS 265
C
 PRO 109HIS 265
D
 GLU 106HIS 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3G8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
110 129Right-handed alpha
Helix 2
2
A
162 173Right-handed alpha
Helix 3
3
A
182 193Right-handed alpha
Helix 4
4
A
224 228Right-handed 310
Helix 5
5
A
229 233Right-handed 310
Helix 6
6
B
107 129Right-handed alpha
Helix 7
7
B
163 173Right-handed alpha
Helix 8
8
B
182 193Right-handed alpha
Helix 9
9
B
224 228Right-handed 310
Helix 10
10
C
111 129Right-handed alpha
Helix 11
11
C
162 172Right-handed alpha
Helix 12
12
C
182 193Right-handed alpha
Helix 13
13
C
229 233Right-handed 310
Helix 14
14
D
110 127Right-handed alpha
Helix 15
15
D
164 172Right-handed alpha
Helix 16
16
D
182 193Right-handed alpha
Helix 17
17
D
229 233Right-handed 310
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There are 8 sheets in PDB entry 3G8L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
141 150anti-parallel
Strand 3
A
152 161anti-parallel
Strand 4
A
252 259anti-parallel
Strand 5
A
176 177anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
141 150anti-parallel
Strand 3
C
144 150anti-parallel
Strand 4
C
152 161anti-parallel
Strand 5
C
252 259anti-parallel
Strand 6
C
198 199parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 213first strand
Strand 2
A
198 205anti-parallel
Strand 3
A
235 238anti-parallel
Strand 4
A
243 246anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
142 150anti-parallel
Strand 3
B
152 162anti-parallel
Strand 4
B
251 259anti-parallel
Strand 5
B
176 177anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 150first strand
Strand 2
D
144 150anti-parallel
Strand 3
D
152 161anti-parallel
Strand 4
D
252 259anti-parallel
Strand 5
D
198 205parallel
Strand 6
D
235 238anti-parallel
Strand 7
D
243 246anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
176 177first strand
Strand 2
D
252 259anti-parallel
Strand 3
D
198 205parallel
Strand 4
D
210 213anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
197 204anti-parallel
Strand 3
B
235 239anti-parallel
Strand 4
B
244 246anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 204first strand
Strand 2
C
211 213anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il