Analysis of interatomic Contacts of Structural Units in PDB entry:
3G8M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G8M entry

There is 1 chain in PDB entry 3G8M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 3G8M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 29Right-handed alpha
Helix 2
2
A
40 48Right-handed alpha
Helix 3
3
A
49 53Right-handed 310
Helix 4
4
A
70 87Right-handed alpha
Helix 5
5
A
97 110Right-handed alpha
Helix 6
6
A
120 124Right-handed 310
Helix 7
7
A
126 130Right-handed 310
Helix 8
8
A
134 140Right-handed alpha
Helix 9
9
A
154 160Right-handed alpha
Helix 10
10
A
182 194Right-handed alpha
Helix 11
11
A
204 211Right-handed alpha
Helix 12
12
A
216 220Right-handed 310
Helix 13
13
A
245 257Right-handed alpha
Helix 14
14
A
265 280Right-handed alpha
Helix 15
15
A
281 305Right-handed alpha
Helix 16
16
A
329 340Right-handed alpha
Helix 17
17
A
366 373Right-handed alpha
Helix 18
18
A
375 392Right-handed alpha
Helix 19
19
A
395 413Right-handed alpha
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There are 4 sheets in PDB entry 3G8M. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
342 343parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
62 63anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
237 241anti-parallel
Strand 3
A
222 226anti-parallel
Strand 4
A
196 200parallel
Strand 5
A
169 171parallel
Strand 6
A
115 117parallel
Strand 7
A
141 142parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
318 322anti-parallel
Strand 3
A
361 365anti-parallel
Strand 4
A
345 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il