Analysis of interatomic Contacts of Structural Units in PDB entry:
3G8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G8Q entry

There are 4 chains in PDB entry 3G8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 278
B
 MET 1LYS 277
C
 MET 1LYS 277
D
 MET 1LYS 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 3G8Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 19Right-handed alpha
Helix 2
2
A
44 53Right-handed alpha
Helix 3
3
A
67 76Right-handed alpha
Helix 4
4
A
91 98Right-handed alpha
Helix 5
5
A
133 148Right-handed alpha
Helix 6
6
A
158 161Right-handed 310
Helix 7
7
A
173 185Right-handed alpha
Helix 8
8
A
200 212Right-handed alpha
Helix 9
9
A
213 216Right-handed 310
Helix 10
10
A
234 248Right-handed alpha
Helix 11
11
B
12 19Right-handed alpha
Helix 12
12
B
44 53Right-handed alpha
Helix 13
13
B
67 77Right-handed alpha
Helix 14
14
B
91 98Right-handed alpha
Helix 15
15
B
133 148Right-handed alpha
Helix 16
16
B
158 161Right-handed 310
Helix 17
17
B
173 185Right-handed alpha
Helix 18
18
B
200 212Right-handed alpha
Helix 19
19
B
213 216Right-handed 310
Helix 20
20
B
234 250Right-handed alpha
Helix 21
21
C
12 19Right-handed alpha
Helix 22
22
C
44 53Right-handed alpha
Helix 23
23
C
67 78Right-handed alpha
Helix 24
24
C
91 98Right-handed alpha
Helix 25
25
C
133 148Right-handed alpha
Helix 26
26
C
158 161Right-handed 310
Helix 27
27
C
173 183Right-handed alpha
Helix 28
28
C
200 212Right-handed alpha
Helix 29
29
C
213 216Right-handed 310
Helix 30
30
C
234 248Right-handed alpha
Helix 31
31
D
12 17Right-handed alpha
Helix 32
32
D
44 53Right-handed alpha
Helix 33
33
D
67 78Right-handed alpha
Helix 34
34
D
91 98Right-handed alpha
Helix 35
35
D
133 148Right-handed alpha
Helix 36
36
D
158 161Right-handed 310
Helix 37
37
D
173 185Right-handed alpha
Helix 38
38
D
200 212Right-handed alpha
Helix 39
39
D
213 216Right-handed 310
Helix 40
40
D
234 248Right-handed alpha
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There are 12 sheets in PDB entry 3G8Q. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
2 5anti-parallel
Strand 3
D
2 5anti-parallel
Strand 4
D
8 11anti-parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
25 30anti-parallel
Strand 3
A
59 62anti-parallel
Strand 4
A
81 86parallel
Strand 5
A
102 108parallel
Strand 6
D
102 107anti-parallel
Strand 7
D
81 85parallel
Strand 8
D
59 62parallel
Strand 9
D
25 30anti-parallel
Strand 10
D
33 39anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 156first strand
Strand 2
A
164 171anti-parallel
Strand 3
A
122 125anti-parallel
Strand 4
A
189 192anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 198first strand
Strand 2
A
270 277anti-parallel
Strand 3
A
260 267anti-parallel
Strand 4
A
220 228parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
2 5anti-parallel
Strand 3
C
2 5anti-parallel
Strand 4
C
8 11anti-parallel
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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 39first strand
Strand 2
B
25 30anti-parallel
Strand 3
B
59 62anti-parallel
Strand 4
B
81 86parallel
Strand 5
B
102 108parallel
Strand 6
C
102 107anti-parallel
Strand 7
C
81 85parallel
Strand 8
C
59 62parallel
Strand 9
C
25 29anti-parallel
Strand 10
C
34 39anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 156first strand
Strand 2
B
164 171anti-parallel
Strand 3
B
122 125anti-parallel
Strand 4
B
189 192anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
270 276anti-parallel
Strand 3
B
260 267anti-parallel
Strand 4
B
220 226parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
151 156first strand
Strand 2
C
164 171anti-parallel
Strand 3
C
122 125anti-parallel
Strand 4
C
189 192anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 198first strand
Strand 2
C
270 276anti-parallel
Strand 3
C
260 267anti-parallel
Strand 4
C
220 228parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
151 156first strand
Strand 2
D
164 171anti-parallel
Strand 3
D
122 125anti-parallel
Strand 4
D
189 192anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
195 198first strand
Strand 2
D
270 276anti-parallel
Strand 3
D
260 267anti-parallel
Strand 4
D
220 228parallel
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