Analysis of interatomic Contacts of Structural Units in PDB entry:
3G8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G8R entry

There are 2 chains in PDB entry 3G8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5VAL 341
B
 LYS 5PRO 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 3G8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 34Right-handed alpha
Helix 2
2
A
49 54Right-handed alpha
Helix 3
3
A
55 59Right-handed 310
Helix 4
4
A
66 73Right-handed alpha
Helix 5
5
A
76 90Right-handed alpha
Helix 6
6
A
100 110Right-handed alpha
Helix 7
7
A
124 133Right-handed alpha
Helix 8
8
A
146 159Right-handed alpha
Helix 9
9
A
176 180Right-handed 310
Helix 10
10
A
181 182Right-handed 310
Helix 11
11
A
183 192Right-handed alpha
Helix 12
12
A
208 217Right-handed alpha
Helix 13
13
A
241 260Right-handed alpha
Helix 14
14
A
268 277Right-handed alpha
Helix 15
15
A
311 315Right-handed 310
Helix 16
16
A
334 336Right-handed 310
Helix 17
17
B
19 34Right-handed alpha
Helix 18
18
B
49 54Right-handed alpha
Helix 19
19
B
55 59Right-handed 310
Helix 20
20
B
66 74Right-handed alpha
Helix 21
21
B
76 90Right-handed alpha
Helix 22
22
B
100 111Right-handed alpha
Helix 23
23
B
118 122Right-handed 310
Helix 24
24
B
124 132Right-handed alpha
Helix 25
25
B
146 160Right-handed alpha
Helix 26
26
B
176 180Right-handed 310
Helix 27
27
B
181 182Right-handed 310
Helix 28
28
B
183 192Right-handed alpha
Helix 29
29
B
208 217Right-handed alpha
Helix 30
30
B
241 260Right-handed alpha
Helix 31
31
B
268 279Right-handed alpha
Helix 32
32
B
334 338Right-handed 310
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There are 5 sheets in PDB entry 3G8R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 11first strand
Strand 2
A
40 47parallel
Strand 3
A
93 98parallel
Strand 4
A
114 117parallel
Strand 5
A
138 141parallel
Strand 6
A
164 168parallel
Strand 7
A
196 201parallel
Strand 8
A
221 225parallel
Strand 9
A
7 11parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 284first strand
Strand 2
A
299 302anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
338 340anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 240first strand
Strand 2
B
221 226parallel
Strand 3
B
196 201parallel
Strand 4
B
164 168parallel
Strand 5
B
138 141parallel
Strand 6
B
114 117parallel
Strand 7
B
93 98parallel
Strand 8
B
40 47parallel
Strand 9
B
7 11parallel
Strand 10
B
221 226parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
281 284first strand
Strand 2
B
299 302anti-parallel
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