Analysis of interatomic Contacts of Structural Units in PDB entry:
3G8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G8Y entry

There is 1 chain in PDB entry 3G8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LYS 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3G8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 31Right-handed 310
Helix 2
2
A
44 55Right-handed alpha
Helix 3
3
A
67 87Right-handed alpha
Helix 4
4
A
149 154Right-handed alpha
Helix 5
5
A
160 164Right-handed 310
Helix 6
6
A
173 180Right-handed alpha
Helix 7
7
A
193 197Right-handed 310
Helix 8
8
A
199 203Right-handed 310
Helix 9
9
A
209 220Right-handed alpha
Helix 10
10
A
223 241Right-handed alpha
Helix 11
11
A
258 269Right-handed alpha
Helix 12
12
A
283 291Right-handed alpha
Helix 13
13
A
305 309Right-handed 310
Helix 14
14
A
312 316Right-handed 310
Helix 15
15
A
318 325Right-handed alpha
Helix 16
16
A
338 352Right-handed alpha
Helix 17
17
A
354 356Right-handed 310
Helix 18
18
A
363 367Right-handed 310
Helix 19
19
A
368 372Right-handed 310
Helix 20
20
A
383 391Right-handed alpha
Helix 21
21
A
394 398Right-handed 310
Helix 22
22
A
401 413Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3G8Y.

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 105first strand
Strand 2
A
108 115anti-parallel
Strand 3
A
123 130anti-parallel
Strand 4
A
184 187anti-parallel
Strand 5
A
137 143parallel
Strand 6
A
245 255parallel
Strand 7
A
274 278parallel
Strand 8
A
331 333parallel
Strand 9
A
358 360parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il