Analysis of interatomic Contacts of Structural Units in PDB entry:
3G93

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3G93 entry

There are 4 chains in PDB entry 3G93 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 27	HIS 492
B	GLY 28	HIS 492
C	GLY 28	ARG 491
D	GLY 28	ARG 491

There are 76 helices in PDB entry 3G93. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	50	63	Right-handed alpha
Helix 2	2	A	80	89	Right-handed alpha
Helix 3	3	A	99	103	Right-handed 310
Helix 4	4	A	105	110	Right-handed alpha
Helix 5	5	A	112	133	Right-handed alpha
Helix 6	6	A	137	159	Right-handed alpha
Helix 7	7	A	167	185	Right-handed alpha
Helix 8	8	A	192	204	Right-handed alpha
Helix 9	9	A	211	222	Right-handed alpha
Helix 10	10	A	236	256	Right-handed alpha
Helix 11	11	A	263	274	Right-handed alpha
Helix 12	12	A	284	317	Right-handed alpha
Helix 13	13	A	317	332	Right-handed alpha
Helix 14	14	A	339	345	Right-handed 310
Helix 15	15	A	346	361	Right-handed alpha
Helix 16	16	A	391	397	Right-handed alpha
Helix 17	17	A	409	414	Right-handed 310
Helix 18	18	A	438	456	Right-handed alpha
Helix 19	19	A	464	468	Right-handed 310
Helix 20	20	B	50	63	Right-handed alpha
Helix 21	21	B	80	89	Right-handed alpha
Helix 22	22	B	99	103	Right-handed 310
Helix 23	23	B	105	110	Right-handed alpha
Helix 24	24	B	112	133	Right-handed alpha
Helix 25	25	B	141	160	Right-handed alpha
Helix 26	26	B	167	185	Right-handed alpha
Helix 27	27	B	192	204	Right-handed alpha
Helix 28	28	B	211	222	Right-handed alpha
Helix 29	29	B	231	256	Right-handed alpha
Helix 30	30	B	263	274	Right-handed alpha
Helix 31	31	B	285	317	Right-handed alpha
Helix 32	32	B	317	332	Right-handed alpha
Helix 33	33	B	339	345	Right-handed 310
Helix 34	34	B	346	361	Right-handed alpha
Helix 35	35	B	391	397	Right-handed alpha
Helix 36	36	B	409	414	Right-handed 310
Helix 37	37	B	438	456	Right-handed alpha
Helix 38	38	B	464	468	Right-handed 310
Helix 39	39	C	50	63	Right-handed alpha
Helix 40	40	C	80	89	Right-handed alpha
Helix 41	41	C	99	103	Right-handed 310
Helix 42	42	C	105	110	Right-handed alpha
Helix 43	43	C	112	133	Right-handed alpha
Helix 44	44	C	141	160	Right-handed alpha
Helix 45	45	C	167	185	Right-handed alpha
Helix 46	46	C	192	204	Right-handed alpha
Helix 47	47	C	211	222	Right-handed alpha
Helix 48	48	C	237	256	Right-handed alpha
Helix 49	49	C	263	273	Right-handed alpha
Helix 50	50	C	285	317	Right-handed alpha
Helix 51	51	C	317	332	Right-handed alpha
Helix 52	52	C	339	345	Right-handed 310
Helix 53	53	C	346	361	Right-handed alpha
Helix 54	54	C	391	397	Right-handed alpha
Helix 55	55	C	409	414	Right-handed 310
Helix 56	56	C	438	456	Right-handed alpha
Helix 57	57	C	464	468	Right-handed 310
Helix 58	58	D	50	63	Right-handed alpha
Helix 59	59	D	80	89	Right-handed alpha
Helix 60	60	D	99	103	Right-handed 310
Helix 61	61	D	105	110	Right-handed alpha
Helix 62	62	D	112	132	Right-handed alpha
Helix 63	63	D	141	160	Right-handed alpha
Helix 64	64	D	167	185	Right-handed alpha
Helix 65	65	D	192	204	Right-handed alpha
Helix 66	66	D	211	222	Right-handed alpha
Helix 67	67	D	234	256	Right-handed alpha
Helix 68	68	D	263	274	Right-handed alpha
Helix 69	69	D	285	317	Right-handed alpha
Helix 70	70	D	317	332	Right-handed alpha
Helix 71	71	D	339	345	Right-handed 310
Helix 72	72	D	346	361	Right-handed alpha
Helix 73	73	D	391	397	Right-handed alpha
Helix 74	74	D	409	414	Right-handed 310
Helix 75	75	D	438	456	Right-handed alpha
Helix 76	76	D	464	468	Right-handed 310

There are 13 sheets in PDB entry 3G93. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	70	first strand
Strand 2	A	73	78	anti-parallel
Strand 3	A	387	390	parallel
Strand 4	A	369	370	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	165	first strand
Strand 2	A	486	490	anti-parallel
Strand 3	A	457	460	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	209	first strand
Strand 2	B	207	209	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	377	first strand
Strand 2	A	380	382	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	70	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	387	390	parallel
Strand 4	B	369	370	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	165	first strand
Strand 2	B	486	490	anti-parallel
Strand 3	B	457	460	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	377	first strand
Strand 2	B	380	382	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	70	first strand
Strand 2	C	73	78	anti-parallel
Strand 3	C	387	390	parallel
Strand 4	C	369	370	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	486	490	anti-parallel
Strand 3	C	457	460	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	377	first strand
Strand 2	C	380	382	anti-parallel

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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	70	first strand
Strand 2	D	73	78	anti-parallel
Strand 3	D	387	390	parallel
Strand 4	D	369	370	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	375	377	first strand
Strand 2	D	380	382	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	460	first strand
Strand 2	D	487	490	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3G93

Analysis of interatomic Contacts of Structural Units in PDB entry:
3G93