Analysis of interatomic Contacts of Structural Units in PDB entry:
3G9V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G9V entry

There are 4 chains in PDB entry 3G9V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 29GLU 225
B
 HIS 39CYS 178
C
 HIS 26SER 223
D
 ARG 41ILE 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3G9V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
89 93Right-handed 310
Helix 2
2
A
121 126Right-handed alpha
Helix 3
3
A
151 156Right-handed 310
Helix 4
4
A
162 167Right-handed alpha
Helix 5
5
B
43 48Right-handed 310
Helix 6
6
B
49 66Right-handed alpha
Helix 7
7
B
76 81Right-handed alpha
Helix 8
8
B
87 103Right-handed alpha
Helix 9
9
B
113 129Right-handed alpha
Helix 10
10
B
141 155Right-handed alpha
Helix 11
11
B
155 166Right-handed alpha
Helix 12
12
B
166 178Right-handed alpha
Helix 13
13
C
89 93Right-handed 310
Helix 14
14
C
121 126Right-handed alpha
Helix 15
15
C
151 156Right-handed 310
Helix 16
16
C
162 167Right-handed alpha
Helix 17
17
D
43 48Right-handed 310
Helix 18
18
D
49 66Right-handed alpha
Helix 19
19
D
76 81Right-handed alpha
Helix 20
20
D
87 103Right-handed alpha
Helix 21
21
D
113 129Right-handed alpha
Helix 22
22
D
141 155Right-handed alpha
Helix 23
23
D
155 166Right-handed alpha
Helix 24
24
D
166 178Right-handed alpha
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There are 10 sheets in PDB entry 3G9V. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 39first strand
Strand 2
A
42 48anti-parallel
Strand 3
A
85 87anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 81first strand
Strand 2
A
59 66anti-parallel
Strand 3
A
99 107anti-parallel
Strand 4
A
110 111anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 81first strand
Strand 2
A
59 66anti-parallel
Strand 3
A
99 107anti-parallel
Strand 4
A
115 116anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
145 147anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 189first strand
Strand 2
A
170 175anti-parallel
Strand 3
A
207 213anti-parallel
Strand 4
A
218 219anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
32 39first strand
Strand 2
C
42 48anti-parallel
Strand 3
C
85 87anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 81first strand
Strand 2
C
59 66anti-parallel
Strand 3
C
99 107anti-parallel
Strand 4
C
110 111anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 81first strand
Strand 2
C
59 66anti-parallel
Strand 3
C
99 107anti-parallel
Strand 4
C
115 116anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 134first strand
Strand 2
C
145 147anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
184 189first strand
Strand 2
C
170 175anti-parallel
Strand 3
C
207 212anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il