Analysis of interatomic Contacts of Structural Units in PDB entry:
3G9W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3G9W entry

There are 4 chains in PDB entry 3G9W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 192SER 408
B
 ASN 205SER 408
C
 GLY 750ASN 788
D
 GLY 750ASN 789
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3G9W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
194 198Right-handed 310
Helix 2
2
A
210 227Right-handed alpha
Helix 3
3
A
233 250Right-handed alpha
Helix 4
4
A
263 267Right-handed 310
Helix 5
5
A
269 273Right-handed 310
Helix 6
6
A
277 289Right-handed alpha
Helix 7
7
A
293 308Right-handed alpha
Helix 8
8
A
357 359Right-handed 310
Helix 9
9
A
373 377Right-handed 310
Helix 10
10
A
387 408Right-handed alpha
Helix 11
11
B
210 227Right-handed alpha
Helix 12
12
B
233 250Right-handed alpha
Helix 13
13
B
263 267Right-handed 310
Helix 14
14
B
269 273Right-handed 310
Helix 15
15
B
277 289Right-handed alpha
Helix 16
16
B
293 308Right-handed alpha
Helix 17
17
B
357 359Right-handed 310
Helix 18
18
B
373 377Right-handed 310
Helix 19
19
B
387 407Right-handed alpha
Helix 20
20
C
750 770Right-handed alpha
Helix 21
21
C
771 773Right-handed 310
Helix 22
22
D
750 770Right-handed alpha
Helix 23
23
D
771 773Right-handed 310
Helix 24
24
D
785 789Right-handed 310
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There are 4 sheets in PDB entry 3G9W. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 321first strand
Strand 2
A
328 335anti-parallel
Strand 3
A
339 343anti-parallel
Strand 4
A
350 355anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 384first strand
Strand 2
A
368 372anti-parallel
Strand 3
A
361 365anti-parallel
Strand 4
D
774 775anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 321first strand
Strand 2
B
328 335anti-parallel
Strand 3
B
339 343anti-parallel
Strand 4
B
350 355anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
381 384first strand
Strand 2
B
368 372anti-parallel
Strand 3
B
361 364anti-parallel
Strand 4
C
774 775anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il