Analysis of interatomic Contacts of Structural Units in PDB entry:
3GA6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GA6 entry

There are 6 chains in PDB entry 3GA6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1003GLU 1256
B
 ALA 2002GLU 2256
F
 G 1 G 11
G
 G 1 C 12
H
 C 1 C 11
D
 G 1 C 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 3GA6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1013 1020Right-handed alpha
Helix 2
2
A
1021 1030Right-handed alpha
Helix 3
3
A
1042 1046Right-handed 310
Helix 4
4
A
1047 1052Right-handed alpha
Helix 5
5
A
1088 1093Right-handed alpha
Helix 6
6
A
1118 1141Right-handed alpha
Helix 7
7
A
1157 1161Right-handed 310
Helix 8
8
A
1174 1187Right-handed alpha
Helix 9
9
A
1193 1196Right-handed 310
Helix 10
10
A
1230 1232Right-handed 310
Helix 11
11
B
2013 2019Right-handed alpha
Helix 12
12
B
2021 2030Right-handed alpha
Helix 13
13
B
2042 2046Right-handed 310
Helix 14
14
B
2047 2052Right-handed alpha
Helix 15
15
B
2088 2093Right-handed alpha
Helix 16
16
B
2118 2142Right-handed alpha
Helix 17
17
B
2157 2161Right-handed 310
Helix 18
18
B
2164 2168Right-handed 310
Helix 19
19
B
2174 2187Right-handed alpha
Helix 20
20
B
2192 2197Right-handed alpha
Helix 21
21
B
2229 2231Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 3GA6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1057 1061first strand
Strand 2
A
1071 1075anti-parallel
Strand 3
A
1033 1037anti-parallel
Strand 4
A
1004 1010parallel
Strand 5
A
1251 1255anti-parallel
Strand 6
A
1234 1239anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1082 1083first strand
Strand 2
A
1097 1101anti-parallel
Strand 3
A
1105 1111anti-parallel
Strand 4
A
1145 1151parallel
Strand 5
A
1222 1227anti-parallel
Strand 6
A
1189 1191anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1205 1206first strand
Strand 2
A
1218 1219anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2057 2061first strand
Strand 2
B
2071 2075anti-parallel
Strand 3
B
2033 2037anti-parallel
Strand 4
B
2004 2010parallel
Strand 5
B
2251 2255anti-parallel
Strand 6
B
2236 2239anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2081 2083first strand
Strand 2
B
2097 2101anti-parallel
Strand 3
B
2106 2111anti-parallel
Strand 4
B
2146 2151parallel
Strand 5
B
2222 2227anti-parallel
Strand 6
B
2189 2191anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il