Analysis of interatomic Contacts of Structural Units in PDB entry:
3GAG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GAG entry

There are 4 chains in PDB entry 3GAG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0GLU 205
B
 MSE 1GLU 205
C
 GLY 0GLU 205
D
 MSE 1GLU 205
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 3GAG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 11Right-handed alpha
Helix 2
2
A
25 37Right-handed alpha
Helix 3
3
A
41 45Right-handed 310
Helix 4
4
A
55 65Right-handed alpha
Helix 5
5
A
70 75Right-handed alpha
Helix 6
6
A
86 88Right-handed 310
Helix 7
7
A
89 100Right-handed alpha
Helix 8
8
A
104 122Right-handed alpha
Helix 9
9
A
123 126Right-handed 310
Helix 10
10
A
127 149Right-handed alpha
Helix 11
11
A
160 168Right-handed alpha
Helix 12
12
A
196 199Right-handed 310
Helix 13
13
B
1 11Right-handed alpha
Helix 14
14
B
25 37Right-handed alpha
Helix 15
15
B
41 45Right-handed 310
Helix 16
16
B
55 65Right-handed alpha
Helix 17
17
B
70 75Right-handed alpha
Helix 18
18
B
86 88Right-handed 310
Helix 19
19
B
89 100Right-handed alpha
Helix 20
20
B
104 122Right-handed alpha
Helix 21
21
B
123 126Right-handed 310
Helix 22
22
B
127 149Right-handed alpha
Helix 23
23
B
160 169Right-handed alpha
Helix 24
24
B
196 200Right-handed alpha
Helix 25
25
C
0 11Right-handed alpha
Helix 26
26
C
25 37Right-handed alpha
Helix 27
27
C
41 45Right-handed 310
Helix 28
28
C
55 65Right-handed alpha
Helix 29
29
C
70 75Right-handed alpha
Helix 30
30
C
85 88Right-handed 310
Helix 31
31
C
89 100Right-handed alpha
Helix 32
32
C
107 122Right-handed alpha
Helix 33
33
C
123 126Right-handed 310
Helix 34
34
C
127 149Right-handed alpha
Helix 35
35
C
160 168Right-handed alpha
Helix 36
36
C
196 199Right-handed 310
Helix 37
37
D
1 11Right-handed alpha
Helix 38
38
D
25 37Right-handed alpha
Helix 39
39
D
41 45Right-handed 310
Helix 40
40
D
55 65Right-handed alpha
Helix 41
41
D
70 75Right-handed alpha
Helix 42
42
D
86 88Right-handed 310
Helix 43
43
D
89 100Right-handed alpha
Helix 44
44
D
104 122Right-handed alpha
Helix 45
45
D
123 126Right-handed 310
Helix 46
46
D
127 149Right-handed alpha
Helix 47
47
D
160 169Right-handed alpha
Helix 48
48
D
196 200Right-handed alpha
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There are 4 sheets in PDB entry 3GAG. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 153first strand
Strand 2
A
174 183anti-parallel
Strand 3
A
77 84anti-parallel
Strand 4
A
48 53anti-parallel
Strand 5
B
201 204parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
B
48 53parallel
Strand 3
B
77 84anti-parallel
Strand 4
B
174 183anti-parallel
Strand 5
B
152 153anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
152 153first strand
Strand 2
C
175 183anti-parallel
Strand 3
C
77 83anti-parallel
Strand 4
C
48 53anti-parallel
Strand 5
D
201 204parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
201 204first strand
Strand 2
D
48 53parallel
Strand 3
D
77 84anti-parallel
Strand 4
D
174 183anti-parallel
Strand 5
D
152 153anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il