Analysis of interatomic Contacts of Structural Units in PDB entry:
3GAQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GAQ entry

There are 2 chains in PDB entry 3GAQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0GLU 171
B
 ALA 0GLU 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3GAQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 12Right-handed alpha
Helix 2
2
A
13 15Right-handed 310
Helix 3
3
A
16 27Right-handed alpha
Helix 4
4
A
146 156Right-handed alpha
Helix 5
5
A
166 171Right-handed 310
Helix 6
6
B
7 12Right-handed alpha
Helix 7
7
B
13 15Right-handed 310
Helix 8
8
B
16 24Right-handed alpha
Helix 9
9
B
146 156Right-handed alpha
Helix 10
10
B
166 171Right-handed 310
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There are 5 sheets in PDB entry 3GAQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
29 34anti-parallel
Strand 3
A
133 138anti-parallel
Strand 4
A
119 124anti-parallel
Strand 5
A
107 116anti-parallel
Strand 6
A
97 101anti-parallel
Strand 7
A
78 87anti-parallel
Strand 8
A
62 70anti-parallel
Strand 9
A
47 57anti-parallel
Strand 10
A
29 34anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
43 44anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
B
143 145anti-parallel
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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
29 34anti-parallel
Strand 3
B
133 138anti-parallel
Strand 4
B
119 124anti-parallel
Strand 5
B
107 116anti-parallel
Strand 6
B
97 101anti-parallel
Strand 7
B
78 87anti-parallel
Strand 8
B
62 70anti-parallel
Strand 9
B
47 57anti-parallel
Strand 10
B
29 34anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
43 44anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il