Analysis of interatomic Contacts of Structural Units in PDB entry:
3GAZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GAZ entry

There are 2 chains in PDB entry 3GAZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6GLU 336
B
 THR 7GLU 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 3GAZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 53Right-handed alpha
Helix 2
2
A
56 60Right-handed 310
Helix 3
3
A
124 130Right-handed alpha
Helix 4
4
A
131 143Right-handed alpha
Helix 5
5
A
161 174Right-handed alpha
Helix 6
6
A
183 194Right-handed alpha
Helix 7
7
A
203 213Right-handed alpha
Helix 8
8
A
226 235Right-handed alpha
Helix 9
9
A
253 259Right-handed alpha
Helix 10
10
A
269 275Right-handed alpha
Helix 11
11
A
277 294Right-handed alpha
Helix 12
12
A
310 320Right-handed alpha
Helix 13
13
B
45 53Right-handed alpha
Helix 14
14
B
56 60Right-handed 310
Helix 15
15
B
114 116Right-handed 310
Helix 16
16
B
124 130Right-handed alpha
Helix 17
17
B
131 143Right-handed alpha
Helix 18
18
B
161 174Right-handed alpha
Helix 19
19
B
183 185Right-handed 310
Helix 20
20
B
186 194Right-handed alpha
Helix 21
21
B
203 213Right-handed alpha
Helix 22
22
B
226 235Right-handed alpha
Helix 23
23
B
253 259Right-handed alpha
Helix 24
24
B
269 275Right-handed alpha
Helix 25
25
B
277 294Right-handed alpha
Helix 26
26
B
310 320Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3GAZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 13first strand
Strand 2
A
20 26anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 112first strand
Strand 2
A
34 43anti-parallel
Strand 3
A
70 78anti-parallel
Strand 4
A
90 94anti-parallel
Strand 5
A
116 118anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 112first strand
Strand 2
A
34 43anti-parallel
Strand 3
A
332 334anti-parallel
Strand 4
A
306 307parallel
Back to list of sheets
Back to top of page

There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
177 182parallel
Strand 3
A
153 157parallel
Strand 4
A
217 222parallel
Strand 5
A
236 244parallel
Strand 6
A
262 265parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
20 25anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 112first strand
Strand 2
B
34 43anti-parallel
Strand 3
B
70 78anti-parallel
Strand 4
B
90 94anti-parallel
Strand 5
B
117 118anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 112first strand
Strand 2
B
34 43anti-parallel
Strand 3
B
332 334anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 199first strand
Strand 2
B
177 182parallel
Strand 3
B
153 157parallel
Strand 4
B
217 222parallel
Strand 5
B
236 244parallel
Strand 6
B
262 265parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il