Analysis of interatomic Contacts of Structural Units in PDB entry:
3GB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GB0 entry

There is 1 chain in PDB entry 3GB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0LYS 372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 3GB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 16Right-handed alpha
Helix 2
2
A
24 38Right-handed alpha
Helix 3
3
A
47 52Right-handed alpha
Helix 4
4
A
105 125Right-handed alpha
Helix 5
5
A
139 143Right-handed 310
Helix 6
6
A
144 150Right-handed alpha
Helix 7
7
A
151 155Right-handed 310
Helix 8
8
A
196 200Right-handed 310
Helix 9
9
A
202 212Right-handed alpha
Helix 10
10
A
253 275Right-handed alpha
Helix 11
11
A
296 309Right-handed alpha
Helix 12
12
A
322 330Right-handed alpha
Helix 13
13
A
353 372Right-handed alpha
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There are 4 sheets in PDB entry 3GB0. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
58 62anti-parallel
Strand 3
A
132 137anti-parallel
Strand 4
A
72 77parallel
Strand 5
A
159 165parallel
Strand 6
A
334 338parallel
Strand 7
A
171 176anti-parallel
Strand 8
A
290 291anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
58 62anti-parallel
Strand 3
A
132 137anti-parallel
Strand 4
A
72 77parallel
Strand 5
A
159 165parallel
Strand 6
A
334 338parallel
Strand 7
A
171 176anti-parallel
Strand 8
A
314 317parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
95 97anti-parallel
Strand 3
A
350 352anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
223 232anti-parallel
Strand 3
A
242 251anti-parallel
Strand 4
A
178 187anti-parallel
Strand 5
A
278 287anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il