Analysis of interatomic Contacts of Structural Units in PDB entry:
3GB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GB8 entry

There are 2 chains in PDB entry 3GB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 53PRO 1062
B
 SER 0PRO 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 64 helices in PDB entry 3GB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 69Right-handed alpha
Helix 2
2
A
75 90Right-handed alpha
Helix 3
3
A
96 114Right-handed alpha
Helix 4
4
A
123 142Right-handed alpha
Helix 5
5
A
148 158Right-handed alpha
Helix 6
6
A
160 176Right-handed alpha
Helix 7
7
A
187 198Right-handed alpha
Helix 8
8
A
198 216Right-handed alpha
Helix 9
9
A
218 233Right-handed alpha
Helix 10
10
A
237 243Right-handed alpha
Helix 11
11
A
245 254Right-handed alpha
Helix 12
12
A
257 259Right-handed 310
Helix 13
13
A
260 274Right-handed alpha
Helix 14
14
A
279 298Right-handed alpha
Helix 15
15
A
303 311Right-handed alpha
Helix 16
16
A
312 340Right-handed alpha
Helix 17
17
A
343 359Right-handed alpha
Helix 18
18
A
362 384Right-handed alpha
Helix 19
19
A
403 424Right-handed alpha
Helix 20
20
A
447 468Right-handed alpha
Helix 21
21
A
468 485Right-handed alpha
Helix 22
22
A
490 504Right-handed alpha
Helix 23
23
A
509 531Right-handed alpha
Helix 24
24
A
533 551Right-handed alpha
Helix 25
25
A
551 558Right-handed alpha
Helix 26
26
A
558 573Right-handed alpha
Helix 27
27
A
579 596Right-handed alpha
Helix 28
28
A
597 599Right-handed 310
Helix 29
29
A
609 616Right-handed alpha
Helix 30
30
A
617 623Right-handed alpha
Helix 31
31
A
626 643Right-handed alpha
Helix 32
32
A
646 675Right-handed alpha
Helix 33
33
A
676 680Right-handed 310
Helix 34
34
A
681 703Right-handed alpha
Helix 35
35
A
706 733Right-handed alpha
Helix 36
36
A
734 735Right-handed 310
Helix 37
37
A
736 741Right-handed 310
Helix 38
38
A
742 766Right-handed alpha
Helix 39
39
A
768 776Right-handed alpha
Helix 40
40
A
776 791Right-handed alpha
Helix 41
41
A
792 796Right-handed 310
Helix 42
42
A
797 812Right-handed alpha
Helix 43
43
A
813 817Right-handed 310
Helix 44
44
A
818 836Right-handed alpha
Helix 45
45
A
841 859Right-handed alpha
Helix 46
46
A
861 866Right-handed alpha
Helix 47
47
A
867 884Right-handed alpha
Helix 48
48
A
886 905Right-handed alpha
Helix 49
49
A
907 932Right-handed alpha
Helix 50
50
A
938 955Right-handed alpha
Helix 51
51
A
969 986Right-handed alpha
Helix 52
52
A
990 1003Right-handed alpha
Helix 53
53
A
1007 1024Right-handed alpha
Helix 54
54
A
1030 1053Right-handed alpha
Helix 55
55
A
1054 1056Right-handed 310
Helix 56
56
B
0 11Right-handed alpha
Helix 57
57
B
25 29Right-handed 310
Helix 58
58
B
40 53Right-handed alpha
Helix 59
59
B
58 65Right-handed alpha
Helix 60
60
B
114 118Right-handed alpha
Helix 61
61
B
200 212Right-handed alpha
Helix 62
62
B
238 248Right-handed alpha
Helix 63
63
B
278 280Right-handed 310
Helix 64
64
B
281 287Right-handed alpha
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There are 3 sheets in PDB entry 3GB8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
103 107first strand
Strand 2
B
269 277parallel
Strand 3
B
254 261anti-parallel
Strand 4
B
119 125anti-parallel
Strand 5
B
234 236anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 152first strand
Strand 2
B
138 142anti-parallel
Strand 3
B
128 135anti-parallel
Strand 4
B
170 177anti-parallel
Strand 5
B
182 191anti-parallel
Strand 6
B
194 195anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 152first strand
Strand 2
B
138 142anti-parallel
Strand 3
B
128 135anti-parallel
Strand 4
B
170 177anti-parallel
Strand 5
B
182 191anti-parallel
Strand 6
B
228 231parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il