Analysis of interatomic Contacts of Structural Units in PDB entry:
3GBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3GBD entry

There is 1 chain in PDB entry 3GBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 16GLN 573
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3GBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 24Right-handed alpha
Helix 2
2
A
30 34Right-handed 310
Helix 3
3
A
44 51Right-handed alpha
Helix 4
4
A
51 59Right-handed alpha
Helix 5
5
A
88 91Right-handed 310
Helix 6
6
A
92 106Right-handed alpha
Helix 7
7
A
123 132Right-handed alpha
Helix 8
8
A
137 141Right-handed 310
Helix 9
9
A
189 205Right-handed alpha
Helix 10
10
A
215 219Right-handed 310
Helix 11
11
A
231 235Right-handed 310
Helix 12
12
A
236 241Right-handed alpha
Helix 13
13
A
245 257Right-handed alpha
Helix 14
14
A
258 261Right-handed 310
Helix 15
15
A
273 282Right-handed alpha
Helix 16
16
A
283 286Right-handed 310
Helix 17
17
A
313 329Right-handed alpha
Helix 18
18
A
345 351Right-handed alpha
Helix 19
19
A
357 371Right-handed alpha
Helix 20
20
A
393 397Right-handed 310
Helix 21
21
A
399 410Right-handed alpha
Helix 22
22
A
416 428Right-handed alpha
Helix 23
23
A
429 433Right-handed 310
Helix 24
24
A
441 446Right-handed 310
Helix 25
25
A
456 461Right-handed 310
Helix 26
26
A
463 469Right-handed alpha
Helix 27
27
A
473 488Right-handed alpha
Helix 28
28
A
489 494Right-handed alpha
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There are 5 sheets in PDB entry 3GBD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 292first strand
Strand 2
A
264 268parallel
Strand 3
A
210 213parallel
Strand 4
A
109 114parallel
Strand 5
A
62 65parallel
Strand 6
A
26 29parallel
Strand 7
A
375 379parallel
Strand 8
A
335 336parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
82 86anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
172 175anti-parallel
Strand 3
A
164 167anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 498first strand
Strand 2
A
506 513anti-parallel
Strand 3
A
516 523anti-parallel
Strand 4
A
566 571anti-parallel
Strand 5
A
539 545anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 532first strand
Strand 2
A
558 561anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il